Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)92 (1.630) 60/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)52 (0.920) 39/284 0.5 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 147 total aligned reads displayed.

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATT  >  NC_000913/1979344‑1979627
                                                                                                                                              |                                                                                                                                             
tggggataacgccttgaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                               <  2:856862‑M1/1‑1 (MQ=255)
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                               <  1:831807‑M1/1‑1 (MQ=255)
ctggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcccgcttattcgcaccttccc                                                                                                                                               >  1:220389‑M1/143‑143 (MQ=255)
 ggggataacgccttaaatggcgaagaaacggcctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                              >  1:984177‑M1/142‑143 (MQ=255)
 caaAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACt                                                                                                                                              >  1:617281/1‑143 (MQ=255)
 caaAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACt                                                                                                                                              >  1:139984/1‑143 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaatgggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                             <  1:987423‑M1/3‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagcagaatttccccgcttattcgcaccttccCTa                                                                                                                                             <  2:189899‑M1/3‑1 (MQ=255)
   tgatagcgccttaaatggcgaagagacggtctaaataggctggttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                            >  2:299918‑M1/140‑143 (MQ=255)
   ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagcagagtttccccgcttattcgcaccttccCTaa                                                                                                                                            <  2:981422‑M1/4‑1 (MQ=255)
   ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                            <  1:1015662‑M1/4‑1 (MQ=255)
   ggataacgccttaaagcgcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                            >  1:959257‑M1/140‑143 (MQ=255)
   aaaaTGAAACACTAATAATCTAAATGGTATGTTGCGCACATTCAAAATAACTCTCTTTAAATATTCGGCTGCTATAAATCATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                            <  2:14973/143‑1 (MQ=255)
    gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                           <  1:832713‑M1/5‑1 (MQ=255)
        gAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaag                                                                                                                                       <  1:251666‑M1/143‑6 (MQ=255)
        acgccttaaatggcgaagaaacggtctaaataggctgattcaaagcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                       >  1:871554‑M1/135‑143 (MQ=255)
         cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaacatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctaagtcgtc                                                                                                                                      >  1:609960‑M1/134‑137 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctaagtcgtcc                                                                                                                                     <  1:559072‑M1/11‑8 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctgccCTAATTAAATa                                                                                                                                     <  1:130248‑M1/11‑1 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaacttccctaagtcgtcc                                                                                                                                     <  2:805630‑M1/11‑8 (MQ=255)
          gcctcaaatcgcgaaggaactgtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctaagtcgtcc                                                                                                                                     >  2:469134‑M1/133‑136 (MQ=255)
           ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAc                                                                                                                                    <  1:767623‑M1/12‑1 (MQ=255)
           ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaataggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcctattcgcaacttgcctaatattagct                                                                                                                                    <  2:240506‑M1/12‑8 (MQ=255)
             ttaaagggcgaagaaacggtctaaataggctgattcaaggcatttaggggagaaaaaatcggctcaaacatgaagaaatgaaatcactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaa                                                                                                                                  >  2:504891‑M1/130‑143 (MQ=255)
                  tggcgaagaaacggtataaataggctgattcaaggcatttacggaaagaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                             >  2:489694‑M1/125‑143 (MQ=255)
                  tcgcgaagaaacgctctagagaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                             >  2:380814‑M1/125‑143 (MQ=255)
                     tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtc                                                                                                                          >  1:97029‑M1/1‑125 (MQ=255)
                     cgaagaaaaggtctaaaaaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                          >  1:397976‑M1/122‑143 (MQ=255)
                      gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                         <  1:967400‑M1/23‑1 (MQ=255)
                       aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                        >  1:940680‑M1/120‑143 (MQ=255)
                              ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                                 >  2:2919‑M1/113‑143 (MQ=255)
                               aTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                <  2:131732‑M1/143‑29 (MQ=255)
                                 gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga                                                                                                              <  1:594833‑M1/143‑31 (MQ=255)
                                  ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagat                                                                                                             >  2:54377‑M1/1‑112 (MQ=255)
                                    aagaggcttattcaaggcatgtacgggagaaaaaatcggctcaaaaatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                           >  2:606153‑M1/107‑143 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                      >  1:850320‑M1/102‑143 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcacaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaacgttaa                                                                                                      <  2:261210‑M1/42‑1 (MQ=255)
                                         gatgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                      >  1:970763‑M1/102‑143 (MQ=255)
                                         caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                      <  2:30599‑M1/143‑39 (MQ=255)
                                         caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                      <  2:402561‑M1/143‑39 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                     >  2:76493‑M1/101‑143 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                     <  1:312414‑M1/43‑1 (MQ=255)
                                           tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAatcaacttaatgaaaata                                                                                                    <  2:493411‑M1/44‑7 (MQ=255)
                                            gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCACCAATCAACTTAATGTTAATGa                                                                                                   <  1:765690‑M1/45‑1 (MQ=255)
                                             attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                  <  2:703768‑M1/46‑1 (MQ=255)
                                               tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTACTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                                                                <  1:706322‑M1/48‑1 (MQ=255)
                                               tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                          >  1:431076‑M1/96‑101 (MQ=255)
                                               tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                          <  2:431076‑M1/6‑1 (MQ=255)
                                               aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggacggtgcacacacgtccctgatacgagatcacgtttgtcgcc                                                                                                >  2:132858‑M1/1‑99 (MQ=255)
                                               aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                <  1:918705‑M1/143‑45 (MQ=255)
                                               aaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                <  1:731673‑M1/143‑45 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTACTGAAATGt                                                                                              <  2:368420‑M1/50‑1 (MQ=255)
                                                    aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                           >  1:164076‑M1/1‑94 (MQ=255)
                                                     gatttacgggaaaaaaaagcggctcgaacatgaaggaatgagatgactgagacaaccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                          >  2:662272‑M1/90‑143 (MQ=255)
                                                     catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatccgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                          <  2:817249‑M1/54‑1 (MQ=255)
                                                      tCACCGTAAATAATCATCTGCTAGAAATGATCACTTTCATTGAAGACCATATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggatcc                                                                                         >  1:474848‑M1/1‑92 (MQ=255)
                                                          acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTCAATGTTAATGAAATGTTTTACatat                                                                                     <  2:959100‑M1/59‑1 (MQ=255)
                                                           cgggagaaaaaatccgctcaaacatgaagaaatgaaacgactgagtcagccgacaagaatttccccgcttattcgcaccttccCTAATTAAATACAAATAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatata                                                                                    >  1:66599‑M1/84‑143 (MQ=255)
                                                              gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                 <  1:725555‑M1/63‑1 (MQ=255)
                                                              aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagctcacgtttgtcatctggagccatagaaca                                                                                 >  1:573343‑M1/1‑84 (MQ=255)
                                                               ataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag                                                                                <  1:811335‑M1/143‑61 (MQ=255)
                                                                gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                               >  1:592301‑M1/79‑143 (MQ=255)
                                                                  aaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCa                                                                             >  1:541948‑M1/77‑143 (MQ=255)
                                                                   tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                            <  1:115950‑M1/143‑65 (MQ=255)
                                                                     atcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatctttgtcatctggagccatagaacagcgtcca                                                                          >  1:614799‑M1/1‑77 (MQ=255)
                                                                       tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAACCAACTTAATGTTAATGAAATGTTTTACATATATTAACCCCTTGt                                                                        <  2:128639‑M1/72‑1 (MQ=255)
                                                                       cTGGTATAAATAATCACGTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                        <  2:334445‑M1/143‑69 (MQ=255)
                                                                          gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTa                                                                     <  2:736497‑M1/75‑1 (MQ=255)
                                                                           tataAATAATCACTTACATGCAATACCAAATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgagatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                    <  2:221648‑M1/143‑73 (MQ=255)
                                                                           ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTACTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTaa                                                                    <  1:637289‑M1/76‑1 (MQ=255)
                                                                           ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTaa                                                                    <  1:990361‑M1/76‑1 (MQ=255)
                                                                            tcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                   >  2:243111‑M1/67‑143 (MQ=255)
                                                                            ataaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTCAggaaggtgcgaacaagtccctgatatgcgatcctgtttgtcctctggcgccatagcaccgggttcatcatgag                                                                   >  1:344904‑M1/1‑70 (MQ=255)
                                                                               aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                >  2:831807‑M1/64‑143 (MQ=255)
                                                                                 catgaggcaatggaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                              >  2:811161‑M1/62‑143 (MQ=255)
                                                                                 catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                              >  1:181735‑M1/62‑143 (MQ=255)
                                                                                  aatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcaggagtcatca                                                             >  1:649037‑M1/1‑64 (MQ=255)
                                                                                       gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACCTAATGTCAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                        >  1:522798‑M1/56‑143 (MQ=255)
                                                                                       gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATCAAATACAAAGAAAGGCAACAATCAACTTAATGTTCATGAAGCCACCTACATATATTAACCACTTGTTAAATGCGgagaacca                                                        <  2:445394‑M1/88‑4 (MQ=255)
                                                                                        tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcttctggagccatagaacagagttcattatgagtcatcaacttac                                                       >  1:317918‑M1/1‑58 (MQ=255)
                                                                                        tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                       >  2:180025‑M1/1‑58 (MQ=255)
                                                                                        aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                       <  1:181078‑M1/89‑1 (MQ=255)
                                                                                              gCAATACCATATAAGTTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgacatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                 <  1:92671‑M1/143‑92 (MQ=255)
                                                                                                 aTACCAGATAAGCTATTGTTAAACAGACACTTACCGCACAACAATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                              <  2:736413‑M1/143‑95 (MQ=255)
                                                                                                        aTAAGCGTTTTTTAAACAGACACTTACCGTACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                       <  2:901309‑M1/143‑102 (MQ=255)
                                                                                                           gccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                    <  1:621905‑M1/108‑1 (MQ=255)
                                                                                                           aGCTATGTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc                                    <  2:334658‑M1/143‑105 (MQ=255)
                                                                                                            ccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAtt                                   >  2:767623‑M1/35‑143 (MQ=255)
                                                                                                                  tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                             >  1:864183‑M1/1‑32 (MQ=255)
                                                                                                                  tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                             >  2:179580‑M1/1‑32 (MQ=255)
                                                                                                                   ttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctggagccatagaacaaaaatcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                            >  1:376551‑M1/1‑31 (MQ=255)
                                                                                                                   ttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                            >  1:824817‑M1/1‑31 (MQ=255)
                                                                                                                       ttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAt                        >  2:484804‑M1/24‑143 (MQ=255)
                                                                                                                           ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtata                    <  2:520433‑M1/124‑1 (MQ=255)
                                                                                                                             gcttattcgcaccttccCTAATTAAATACAAAGTAAGTCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                  >  2:208434‑M1/18‑143 (MQ=255)
                                                                                                                                   tcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAcc            <  1:335754‑M1/132‑1 (MQ=255)
                                                                                                                                   cGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaaacgcggtcagaccaga            >  1:628445‑M1/1‑15 (MQ=255)
                                                                                                                                   cGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcaggaagcgccgtcagaacaga            >  1:460399‑M1/1‑15 (MQ=255)
                                                                                                                                     gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTCCACTATTTTCTTATAATTACATTTGAAATTATATGATCAACgg          <  2:156046‑M1/134‑1 (MQ=255)
                                                                                                                                       accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGGACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa        <  1:847097‑M1/136‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATT  >  NC_000913/1979344‑1979627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.