New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2443834	NA (NA)	5 (0.090)	5/282	7.7	NA	noncoding (46/80 nt)	REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 2443869	NA (NA)					intergenic (+99/+22)	mnmC/yfcL	fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.

GGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGTAT  >  NC_000913/2443727‑2444009                                                                                                                                               |                                                                                                                                              gggTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCa                                                                                                                                               <  2:670865/143‑1 (MQ=255)    tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc                                                                                                                                            >  2:282258/1‑143 (MQ=255)    tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGAGCAGCGTCGGCTCAGTGAtgc                                                                                                                                            >  1:399667/1‑143 (MQ=38)      cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTCGGACCGATTGGACGCGATAAGCGTCGCATCAGGCAtgcgg                                                                                                                                          >  1:686935/1‑141 (MQ=39)       ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgctgc                                                                                                                                         <  1:955031/143‑1 (MQ=255)           actgttgAAGCGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa                                                                                                                                     <  1:29255/141‑1 (MQ=255)             tgttgAAGGGGAAGGCGGTGAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGa                                                                                                                                   <  2:330826/143‑1 (MQ=255)              gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGGACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAc                                                                                                                                  >  2:589114/1‑143 (MQ=255)               tggacgggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcg                                                                                                                                 <  2:943301/138‑1 (MQ=255)                 gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGAcgcc                                                                                                                               >  1:101539/1‑143 (MQ=255)                   aGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                                                                                                             <  1:667185/143‑1 (MQ=255)                          aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTAc                                                                                                                      <  1:724086/143‑1 (MQ=255)                          aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGCGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGCCGCCGCAACTTAc                                                                                                                      >  2:334243/1‑143 (MQ=255)                            cGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                                                                                                                    <  1:510427/143‑1 (MQ=255)                                gaaGGCGGGTGAGTCTGTCCTCGCGGCGTTTGCCGGATGCGGCGTGTACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGACGCCGCAACTTACTGCtgt                                                                                                                <  2:98938/142‑1 (MQ=37)                                             tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGGCGCGATAGGCGTCGCATCAGGAATAAATCGTTAGCCTCTGCAACTTACTGCTGTGACGCCGGCTGaa                                                                                                   >  1:421458/1‑143 (MQ=25)                                               tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCACCTTACTGCTGTAACGCctgctgcacc                                                                                                 >  2:460705/1‑139 (MQ=255)                                               tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGCCGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCCGCGCCGCCCGCAGCAAc                                                                                                 >  2:543411/1‑143 (MQ=38)                                                gCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAcc                                                                                                >  1:350588/1‑142 (MQ=255)                                                 ctgtctgaGTGTTGGGGGGATGGGGGGTGGACGCCTTATCCGACAAGGTTAAAACGTGGAGGGTTGACAACACGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGCCGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg                                                                                               <  2:448846/136‑1 (MQ=255)                                                 ctctCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATACGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg                                                                                               <  2:640878/143‑1 (MQ=255)                                                  tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGCAACggg                                                                                              >  2:585521/1‑143 (MQ=255)                                                  tctcGCAGTGTTTGCCGGACGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAgg                                                                                              <  2:488784/143‑1 (MQ=255)                                                      gCAGTGTTTGCCGGATGCGGCGTGAACGCCTCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATACGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGtttt                                                                                          <  1:273346/143‑1 (MQ=255)                                                        aGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc                                                                                        <  2:680481/143‑1 (MQ=255)                                                        aGTGGTTGCCGGATGCGGCGTGAACGCCTGATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGGAGCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc                                                                                        <  2:417359/143‑1 (MQ=255)                                                            tgtGCCTGATGCGGCGTGAACGCCTTATCCGACCTACGTGGGCGGTGTAGGCCTGATCAGACGAGATAAGAATGACAACAGGCATGCTGTTCCAGTCGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca                                                                                    <  2:884930/141‑1 (MQ=255)                                                             ttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACat                                                                                   >  1:676033/1‑143 (MQ=255)                                                                        ggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAGCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGGGCCGCCTGCTGAAACAGGTATGCCCACATATCGGTCACCa                                                                        >  2:743389/1‑143 (MQ=39)                                                                            ggaccGCCTTATCCGCCCTACGTGTGACGTGTAGGCATGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGACGCCGCAACTTACTACTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAgcgc                                                                    <  1:525661/139‑1 (MQ=39)                                                                                   cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGCCGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCa                                                             >  1:736808/1‑143 (MQ=255)                                                                                    ttATCCGACCTTCGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCTCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAc                                                            <  2:626515/143‑1 (MQ=255)                                                                                    ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTACAGATGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAc                                                            >  1:378961/1‑143 (MQ=255)                                                                                     tATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAcg                                                           <  1:946309/143‑1 (MQ=255)                                                                                         cGACCTATGTGTTACGTGTAGTCCTGATAAGACGCGATACGTGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACACCTGCTGAAACAGGTTTTCCAACATATCGGTCACCAGCGCCTGGTCACgcggc                                                       <  2:180435/143‑1 (MQ=255)                                                                                         cGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGTTTTTAGGCCTGCTGTAACAGGTTTTACCACGTATCGGTCCCCCGCCCCTGGTCAcggcgc                                                       >  2:249806/1‑139 (MQ=37)                                                                                         cGACCTACGGGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcggc                                                       <  2:704259/143‑1 (MQ=255)                                                                                          gACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcggcg                                                      >  1:540235/1‑143 (MQ=255)                                                                                                  tgggACGTGTACGCCTGATAAGACGCGATAAGCGTCGCGTCAGGCATGCTGCGCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCa                                              <  2:610298/140‑1 (MQ=255)                                                                                                   gtcaCGTGTAGGCCTGCTAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCAc                                             <  1:725402/140‑1 (MQ=255)                                                                                                    tgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCAGCAGCGCCAGGTCACGCGGAGACAATTCAcc                                            >  1:105179/1‑143 (MQ=255)                                                                                                    tgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATAGCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCAcc                                            <  1:695990/143‑1 (MQ=255)                                                                                                        gtgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGGGACGCCGGCTGAAACAGGTTTTCCCACAAACGGGACACCAGCGCCTGGTCACGCGGCGAGAATTGACC‑AGCa                                       >  1:200426/1‑143 (MQ=38)                                                                                                          gtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCCCCAGCGCCTGGTCACGCGGCCACCATTCACC‑CGCAcc                                     >  1:979586/1‑143 (MQ=255)                                                                                                             ggCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAAt                                  <  2:889531/143‑1 (MQ=255)                                                                                                                 ggATAAGACGCGATACGCGTCGCACCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCt                              <  2:101539/142‑1 (MQ=255)                                                                                                                        aCGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAGCTTCATACGCCCACCCCTGCTGAGGCCCCTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCa                       <  2:449490/143‑1 (MQ=255)                                                                                                                        aCGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGTCGCCTGCTGAACCAGGGTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCACTGGCTTTTTGCa                       >  2:214841/1‑143 (MQ=255)                                                                                                                            gATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑GGCCCCACTGGCTGTTTCCAGCct                   >  1:784628/1‑143 (MQ=255)                                                                                                                                aGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTgg               >  2:773125/1‑143 (MQ=255)                                                                                                                                 gCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGc              <  2:686935/143‑1 (MQ=255)                                                                                                                                           aGGCATGCTGCTCCAGACGCCGCACCCTACTGCTGTGACGCCTCCCGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGTTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGt    <  2:505423/143‑1 (MQ=255)                                                                                                                                             gCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGTAt  <  1:520562/143‑1 (MQ=255)                                                                                                                                             gCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTCCCCACATATCGGTCACCCGCACCTGGACCCGCGGCGCCAAGTCACCGAGC‑CCAATCGCCGTTTCCAGACTCTGACTAAAGGGCGTaa  >  2:747796/1‑142 (MQ=255)                                                                                                                                               |                                                                                                                                              GGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGTAT  >  NC_000913/2443727‑2444009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.