New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1592576	63 (0.990)	3 (0.050)	3/248	9.2	5.2%	intergenic (‑134/+89)	hipB/yneO	antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog
	?	NC_000913	= 1592558	55 (0.990)					intergenic (‑116/+107)	hipB/yneO	antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTATAGATCTTCTGAAAGCTCATCATGTCATACGTCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGA  >  NC_000913/1592416‑1592698                                                                                                                                               |                                                                                                                                             gCTATAGATCTTCTGAAAGCTCATCATGTCATACGTCCACAGCAAGTTTATCCGCGTAAGGGGGTATTATAAGTTTTATCCTTTAGTGAGGATAAGTAAATATGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGa                                                                                                                                              >  2:716458/1‑143 (MQ=255)                     tcatcaTGTCATACGTCCACAGCAAGTTTATCCGCTTACGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATaaa                                                                                                                          >  2:698224/1‑143 (MQ=255)                        tcatGTCATACGTCCACAGCAAGTTTATCCGCTCAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAag                                                                                                                       <  1:579628/143‑1 (MQ=255)                        tcatGTCATACGTCCACAGCAAGTTTATACGCTTAAGGGTATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAag                                                                                                                       <  1:893337/143‑1 (MQ=255)                          atGTCATACGTCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGCTATCCGCGAGCGCGGATAGAAagga                                                                                                                     >  2:492216/1‑143 (MQ=255)                             tCATACGTCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAggagga                                                                                                                  <  1:672904/143‑1 (MQ=255)                              cATACGTCCACAGCAAGTTTATCCGCGTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGAt                                                                                                                 <  1:461472/143‑1 (MQ=255)                               aTACGTCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATCAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAACCAggaggact                                                                                                                >  2:211227/1‑141 (MQ=255)                               aTACGTCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGAtt                                                                                                                >  1:830787/1‑143 (MQ=255)                                    tCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAGAt                                                                                                           >  1:149879/1‑143 (MQ=255)                                      ctcaGCAAGTTTGTCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTTGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATaa                                                                                                         <  2:434307/141‑1 (MQ=255)                                      cacaGCCAGTTTATACGCTTAAGGGGGTAGTATAAGTTGTATCCTTTAGTGAGGATAAGTCAATCAGGAAACACAGCTTATCCGCTCTACGGAAAAAACGCGACGATATACGCGATCGCGGACAAAACGGAGGATATaacgag                                                                                                         >  2:91525/1‑139 (MQ=255)                                      cacaGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGCTGGCGGATACAACGGAGGATTTAAATaa                                                                                                         >  1:615825/1‑143 (MQ=255)                                      cacaGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATaa                                                                                                         <  2:1072576/143‑1 (MQ=255)                                      cacaGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATaa                                                                                                         <  1:354174/143‑1 (MQ=255)                                      cacaGCAAGTTTATCCGCTTAAGAGGCTATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATaa                                                                                                         >  2:822154/1‑143 (MQ=255)                                         aGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCAGCAATCGCGGATAAAAAGGAGGAATTAAATAAAGc                                                                                                      >  2:871614/1‑143 (MQ=255)                                             actttATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCCCTATCCGTGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTg                                                                                                  <  1:48342/141‑1 (MQ=255)                                             aGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGATGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCTCTATCGCTGATAAAAAGGAGGATTTAAATAAGGCGTTg                                                                                                  <  1:556324/143‑1 (MQ=255)                                              gTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGAGAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGa                                                                                                 >  1:1101493/1‑143 (MQ=255)                                               tttATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGAt                                                                                                <  2:826720/143‑1 (MQ=255)                                               tttATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGAt                                                                                                <  2:44367/143‑1 (MQ=255)                                                 gagtcGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTAGCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATgc                                                                                              <  2:943089/139‑1 (MQ=255)                                                   tcggCTTAAGGGGATATTATAAGTTTTCTCCTTTCGGGAGGATAAGTCAATCTGGAAACACATCTTAGCCGCCCTACGTGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATgcgc                                                                                            <  2:964967/140‑1 (MQ=255)                                                      gCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATACCGCGTTGATGCGCCGt                                                                                         >  1:72008/1‑143 (MQ=255)                                                          aaGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGa                                                                                     >  1:999195/1‑143 (MQ=255)                                                           tggtgATATTATAAGTTTTTTCCTTTAGTGAGGATAGGTCAATCTGGAAACACATCTTAGCCGCTCTACGGGATAAACGCTGCGATGTCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGaa                                                                                    <  2:429435/139‑1 (MQ=255)                                                           aGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGaa                                                                                    <  1:903530/143‑1 (MQ=255)                                                            ggggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATCAACGCTGCGATATCCGCGATCGCGGTGAAAAAGGTGGTTTTAAATAAGTCGCTGATGCGCCGTTTGAAg                                                                                   >  1:258925/1‑143 (MQ=255)                                                            ggggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAAAAAATCTTGTCCGCTTTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAg                                                                                   >  1:266217/1‑143 (MQ=255)                                                               gATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCg                                                                                <  1:949493/143‑1 (MQ=255)                                                               gATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCg                                                                                <  1:698224/143‑1 (MQ=255)                                                                    tataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGATGATGCGCCGGTTGAAGAAGGCAat                                                                           >  2:899042/1‑143 (MQ=255)                                                                     ataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAata                                                                          >  1:976641/1‑143 (MQ=255)                                                                     ataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGATCTACGAGATAAACGCTGCGATATCCACGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAata                                                                          >  1:753288/1‑143 (MQ=255)                                                                             tATCCTTTAGTTACGATGAGTCAATCTGGAAACACCCCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCg                                                                  <  2:504973/143‑1 (MQ=255)                                                                                acTTTAGTGAGGATAAGTCAATCTGTAAACTCATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCAt                                                               <  2:295674/142‑1 (MQ=255)                                                                                      gTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAtc                                                         >  1:892193/1‑143 (MQ=255)                                                                                       tGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAACCGCTGCGATATCCGCGATCGCCGATAAAAAGGAGGATTTAACTAAGGCGCTGATCCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAtcc                                                        >  2:591968/1‑142 (MQ=255)                                                                                          gggtAAGTCAATCTGGAAACACATCTTAGCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGa                                                     <  2:1104138/140‑1 (MQ=255)                                                                                           gATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGAc                                                    <  1:424809/143‑1 (MQ=255)                                                                                              aaGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATg                                                 <  2:116825/143‑1 (MQ=255)                                                                                                gTCAATCTCGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCg                                               <  1:705811/143‑1 (MQ=255)                                                                                                 tCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGCAGTCGGCAATATTAAGCCGCATGCCATCCCGACATGCgg                                              >  1:1086345/1‑143 (MQ=255)                                                                                                     tCTGGAAACACATCTTATACGGTCCGCTAGAAACCCGCACCTGTACCCGCGAGCGCGGATAAAAAGGAGGAACTAAATAAGGCGGTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCAAGCCATCCCGACATGCGGCtca                                          >  2:636310/1‑141 (MQ=255)                                                                                                           cacgccgcTTATCCGCTCTGCGGGAGAAACGCTGCGAGATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGt                                    <  2:568888/136‑1 (MQ=255)                                                                                                            acacATCTTATCCGCTCTACGGGATAAACGCTGCCGTATCCGCGATCGCGGTTATTACACAGGTTTGATTCAAGGCGTTGATGCGCCGTTCGAAGTCGACAATATTAAGCCGCATGTCGTCTCGACATGCGGCTCATAAGGtc                                   >  2:1122098/1‑142 (MQ=255)                                                                                                              acaTCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGCTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCAATCTCGACATGGGGCAGATACGGGTTa                                 >  1:1059768/1‑143 (MQ=255)                                                                                                                        cGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTatat                       >  1:541894/1‑143 (MQ=255)                                                                                                                            ctACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCa                   <  1:585782/143‑1 (MQ=255)                                                                                                                               cGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTc                >  2:436611/1‑143 (MQ=255)                                                                                                                                  gATAATCGTTGGGATATCCGCAGTCGGGGAGAAAAAGGAGGATGTAACTAAGGCGTTGATGCGCCGTTTGAAGGCCGCAATATGAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACTAGCTATATTTCACTCCCa             <  2:223823/143‑1 (MQ=255)                                                                                                                                         gCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTCTATTTCCCTCCCCGCGTgtc      >  1:605344/1‑141 (MQ=255)                                                                                                                                          cTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc     <  2:308332/143‑1 (MQ=255)                                                                                                                                           tGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGTATGCCCt    >  1:55075/1‑143 (MQ=255)                                                                                                                                             tgATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCACCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGa  <  1:498006/142‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             GCTATAGATCTTCTGAAAGCTCATCATGTCATACGTCCACAGCAAGTTTATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGA  >  NC_000913/1592416‑1592698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.