| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2868820 | 40 (0.930) | 3 (0.070) | 3/272 | 6.4 | 7.8% | intergenic (‑67/+73) | nlpD/pcm | activator of AmiC murein hydrolase activity, lipoprotein/L‑isoaspartate protein carboxylmethyltransferase type II |
| ? | NC_000913 | = 2868830 | 33 (0.800) | intergenic (‑77/+63) | nlpD/pcm | activator of AmiC murein hydrolase activity, lipoprotein/L‑isoaspartate protein carboxylmethyltransferase type II | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCGCCTCCCCGACGA > NC_000913/2868689‑2868971 | caTAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGAt < 1:429300/143‑1 (MQ=255) tAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCCCCCTACTGAACACTGGAAACGATGt > 1:374915/1‑143 (MQ=255) tAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGt > 1:759104/1‑143 (MQ=255) gCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCACGGCACCCGACCGAACACTAGAAAAGAtacta > 2:565429/1‑139 (MQ=255) aGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCACGGCACCCTACTGAACACTGGACAAGATGGTCCCGATACg > 2:605485/1‑143 (MQ=255) gTGACAACGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGc < 2:473805/143‑1 (MQ=255) ccgttcgCCGCATTGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCCTCCCACCCACCGTACTGTACGTTGGAAAAGATGTTCACGATACGCTg > 1:324659/7‑143 (MQ=255) cgaaGCCGGAATGCGGCGAACGGTGAATTTTGTGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATGACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGAc < 2:91217/141‑1 (MQ=255) aaaGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGAcc > 1:319837/1‑143 (MQ=255) ccGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATCTATCCCCCAGGAAAAATTGGTTAATAACCACTGACATAATTACCGCGCAACGCACCCTACTGCACCCCGGAAAAGATGTTCACGATACCCTAACCTGCg > 2:516861/1‑143 (MQ=255) cGCAATGCGGCGAATGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAAATGGTTCATGACCAGCGCCATACTTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTAACGATACGCTGACCTGCga > 2:513335/1‑142 (MQ=255) cGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGATAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACGCAACACTGGAAAAGATGTTCACGATACGCTGACCTGCgg > 2:762698/1‑143 (MQ=255) ggcgACCGGTCAAGTGTGGGCTTCCCGCGCTCACTTACCCCCCAGCAAAAATTGGTTAAGAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATaa < 1:646494/143‑1 (MQ=255) cgAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAAcc > 1:241394/1‑143 (MQ=255) aaCGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAg < 1:340820/143‑1 (MQ=255) aaTTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAAt < 1:228596/143‑1 (MQ=255) ttttGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAGTAGCCAGGAGAAATcc > 1:452235/1‑143 (MQ=255) tggggCTGTCCGCGCTTATTTCTCCCCTAGGAACAATTCGTTCTTAGCCCGTGAAATAAGTGCCCTGCAGGGCACCCTACTGAACGCTTGAAAAGATGTTCACGTTACGCTGTCCTGCGGCAATATAACCAGGAAAAATCCAg < 2:630803/141‑1 (MQ=255) gctgtATCACCGAGGAGAAATTGGGTAGTAACCAGTGACATAATTACCGTGCAAGGCACCCTCCTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGttt < 2:251014/139‑1 (MQ=255) cccAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAACTCAAGGTATATCCTCACGTTTTAACCCAGc > 2:742814/1‑143 (MQ=255) ccAGGAAAAATTGGTTAACAACCAGTGACATAAGTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCt < 1:484021/143‑1 (MQ=255) aaaaaTTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGACAAATCCAGTAGTTTCCTCACGTTTCAAGCCAGCTCAccc > 2:159667/1‑143 (MQ=255) ttAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTaaa > 1:57118/1‑143 (MQ=255) ttAATAACCAGTGACAGAATGACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTaaa < 1:37487/143‑1 (MQ=255) caaCCAATGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGa < 1:425351/142‑1 (MQ=255) aaCCGGGCAAGGCACCCGACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTc < 1:667798/142‑1 (MQ=255) ccGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCa < 1:417142/143‑1 (MQ=255) gTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACg > 1:250919/1‑143 (MQ=255) aaGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGAAGAAATCGCAAGACCTCCACGGTAt > 2:297011/1‑143 (MQ=255) aaGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTAGGGCAAAATGACCAGCAAAATTCTATGTATGTCCTCACGTTTTAAGCCNGAGCACCCCTCACTAAGGGGACAAACCGCCCGGCCTCCAccggat > 2:93428/1‑138 (MQ=255) aGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTACAGGGACAAAGCGCACGGCCCCCAccgcacc > 2:328103/1‑137 (MQ=255) gccgaaggAACACGGGACAAGATGCTGGCGATACGCTGACCTGCGGCAAGGTAGCCAGTAAAACTCCAGCTATTTCCTCCCGTTTCAGGCGAGCTCCCCCCCCGGCAAAGGGACAAAGCGCACGGCCTCCACGGTATCGataa < 2:557234/136‑1 (MQ=255) cccTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCCCTAAAGGGACCACGCGCACGGCCTCCACGGGATTGataa > 1:211181/1‑143 (MQ=255) cTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGataata < 1:328878/143‑1 (MQ=255) aaCACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCg > 1:563081/1‑143 (MQ=255) gAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCGCCTcccc > 1:226114/1‑143 (MQ=255) gATGTTCACGCAACGCTGACCTTCGGCAAAATAACCAGGAAAACTCCAGGTATTTCCGCGCGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCGCCTCCCcgacga < 2:693680/143‑1 (MQ=255) | CATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCGCCTCCCCGACGA > NC_000913/2868689‑2868971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |