New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3469435 =	39 (0.910)	3 (0.070)	3/276	6.4	7.7%	coding (419/2694 nt)	chiA	periplasmic endochitinase
	?	NC_000913	3469452 =	34 (0.820)					coding (402/2694 nt)	chiA	periplasmic endochitinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCGTAGCGGCACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTC  >  NC_000913/3469311‑3469578                                                                                                                                              |                                                                                                                               tgccccaGCGGCACGAACCTACCGCCATGAGTTGCTGGCATCATTGATTTTCGCATCACCCCGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCctgct                                                                                                                               <  1:224257/137‑1 (MQ=255)           gCACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCa                                                                                                                     >  1:39546/1‑143 (MQ=255)            cACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAg                                                                                                                    <  1:404458/143‑1 (MQ=255)                      aCGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGGGGCTACCCACCAGGCGTTTTTATATGCCGCCCCGTTCAAGACGACATACCAGGGCGTCCCGCCCTGCTGTTCATTCCGGGCAACTACag                                                                                                          >  1:275857/1‑143 (MQ=255)                        gCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACACACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACagaa                                                                                                        >  1:613877/1‑143 (MQ=255)                          cATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACcgaagg                                                                                                      >  1:210443/1‑142 (MQ=255)                               gTTGCCGGCATCACTGCTTGTCGCATCGCCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATAGACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAg                                                                                                 <  2:400750/143‑1 (MQ=255)                                ttGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCACCTACAGAAGAATTata                                                                                                >  1:379223/1‑141 (MQ=255)                                 tGCTGGCATTAGTGCGTTCCGCATCACCCGGACAGTTAGAAGAGGCCACCCACCAGGCATTTTTATATACCGCACCATTACAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGAc                                                                                               <  1:59108/143‑1 (MQ=255)                                    tGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCCGGCAACTCCCGAAGAATTAAACTGa                                                                                            >  1:60671/1‑143 (MQ=255)                                                ttttCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCtgt                                                                                >  2:781595/1‑143 (MQ=255)                                                    cGCATCTGCCGGACAGTTAGACGAGGCGACCCACCAGGCATTGTTATATACCGCACCATGAAAGACGCCATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTg                                                                            <  2:603652/143‑1 (MQ=255)                                                    cGCATCCCCCGGACAGTCAGAAGACGCTACCCACCCGGCATTTTTATATACCGCACCCTTAAAGACGACCTACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTg                                                                            <  1:151255/143‑1 (MQ=255)                                                    cGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTg                                                                            <  1:71598/143‑1 (MQ=255)                                                      cATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGgt                                                                          <  1:531792/143‑1 (MQ=255)                                                           cccGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTCGc                                                                     >  1:259277/1‑143 (MQ=255)                                                            ccGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGcc                                                                    >  1:382268/1‑143 (MQ=255)                                                                  aGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACGGTGCCCTGTGCTGGTGGAGACGagacg                                                              >  2:260536/1‑139 (MQ=255)                                                                    ttAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGCACCGcc                                                            >  2:774986/1‑143 (MQ=255)                                                                            ggCTTCCCTCCGGGCATTTTTATAGACCGCACCATTTAAGACGACATACCAGGCCTGACCGTCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGcag                                                    <  2:58247/143‑3 (MQ=255)                                                                             gCTACCCACCAGGCATTTTCATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCgg                                                   <  1:90591/143‑1 (MQ=255)                                                                               tACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGAGCTGGTGTATCCGAACCGCCATTAGCCGGCg                                                 <  2:475375/143‑1 (MQ=255)                                                                                  ccaccaGGCATTTTTCTCTACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTAt                                              <  2:212522/143‑1 (MQ=255)                                                                                                       cGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGGTGCCGGCGAactggaat                         >  2:686651/1‑143 (MQ=255)                                                                                                        ccACCCTTATAGGCCACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTACACGGAACGTTGCCTTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttgaatt                        <  2:726767/142‑1 (MQ=255)                                                                                                            cATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGTCCTGGGCCGGCGTATTGGATGCAGGCGTAtttgaatttgaa                    >  1:649871/1‑143 (MQ=255)                                                                                                            cATTAAAGACGACATACCAGGTCGGACCGCCCTGCTGTTGATGCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTAtttgaatttgaa                    <  1:22512/143‑1 (MQ=255)                                                                                                             aTTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGCGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGCATTTgaag                   >  1:346164/1‑143 (MQ=255)                                                                                                              ttAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaaga                  >  2:102887/1‑143 (MQ=255)                                                                                                                  aGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGAt              <  2:39546/143‑1 (MQ=255)                                                                                                                    acgacATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGCTGCAGGCGTGTTTGACGTTGAAGAAGATGa            >  2:333641/1‑143 (MQ=255)                                                                                                                        cATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGCATTTGAAGAAGATGAGCTg        >  2:170277/1‑143 (MQ=255)                                                                                                                              aGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTCGAGCCAGGCGAATTGGAGTTTGAAGAAGATGAGCTGCCGctc  >  2:269609/1‑143 (MQ=255)                                                                                                                              aGGTCTGACCGCCCTGCTGTTTATTAAAGGCAACTACAGAAGAATTAGACGGAACAGTGCACTGTGCTGGTGTAGCCGAACCGCCATTAGCCAGCGAATTGAGTGCATGCGTATTTGAATTTGAAAAATATCAGCTGCCGctc  >  2:2348/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                               TGCCGTAGCGGCACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTC  >  NC_000913/3469311‑3469578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.