New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2667128 =32 (0.600)3 (0.060) 3/266 6.6 10.9% coding (719/1140 nt) hcaT putative 3‑phenylpropionic transporter
?NC_000913 = 3026941 19 (0.380)coding (1176/1320 nt) guaD guanine deaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2667277‑2667128
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtgggTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAAGTTGCCAATCAAATCGTCAAGGCCCAGAGATTTCGCTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGCCGAGAGGCGATAGCCTTGTAATTGCAA  <  NC_000913/3026941‑3026804
                                                                                                                                                                                                                                                                                                
GAGCACCGGTTGCTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGTGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGG                                                                                                                                                   <  1:326749/143‑1
 AGCACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTGTGTGTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGGTGGCCACTCGGCCGCGGC                                                                                                                                                  >  1:263750/1‑143
   CACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGGAGCTGGCTACTCGGCCTCGGCGG                                                                                                                                                >  1:90392/1‑143
    ACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTGCTGGCAGGCAGCTGGCTCCTCGGCCTCGGCGGT                                                                                                                                               >  2:598634/1‑143
     CCGGTTGGTCTGCGTGGTTGGCGCTGGGTCGGCAGAACTGGCGTTTTCTGGCCTCCGTTTCCTTAGTGGCGTGTGCCCTTGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTG                                                                                                                                              <  2:518649/143‑1
      CGGTTTGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCTTGCGTTTGTTTATTGCAGGGGCCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCATCTGGCTTCTCGGCCTCGGCGGTGG                                                                                                                                             <  2:347683/143‑1
       GGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGCGCTGGCGCTTTCTGGCCTGCGTTTGCTCATTGCAGGCGGCCCATGCGGCCTACCACGGTGGTGGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGG                                                                                                                                            <  2:674956/143‑1
         TTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCGGGCTCCTCGGCCTCTGCGGCGGGTT                                                                                                                                          >  2:762822/1‑143
                                                                                                     TTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGGTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAA                                                                                                     >  1:393982/1‑88
                                                                                                     TTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGGTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAA                                                                                                     <  2:393982/88‑1
                                                                                                                                       cgtcgctGCGGTGGTTTCCATCAGCCCGCACGCAGCCTCTTTGCCAGGTAACAAGTTGCCAATCACATCGTCAAGGCCCAGAGATTTCGCTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGCCGAGAGGCGATAGCCTT            <  2:40824/136‑1
                                                                                                                                                 ttgtGTTCCATCTCTATGAAATCAGCCTCTTGGCCAGGTAAAAAGTTGCCAATCGAATCGTCAAGGCCTAGAGATTTCGTTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGTCGAGAGGCGATAGCCTTGTAATTGCAA  <  2:526120/139‑1
                                                                                                                                                                                                                                                                                                
GAGCACCGGTTGGTCTGCGTGGTTGGCGCTGGTTCGCCAGAACTGGCGCTTTCTGGCCTGCGTTTGTTTATTGCAGGGGGCACATGCGGCCTATTACGGTTTTAGCGCCATTTACTGGCAGGCAGCTGGCTACTCGGCCTCGGCGGTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2667277‑2667128
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtgggTTCCATCACCACGAAATCAGCCTCTTTGCCAGGTAAAAAGTTGCCAATCAAATCGTCAAGGCCCAGAGATTTCGCTCCGCCGAGCGTGGCCAGGTAAAACGCTTCATATGCCGAGAGGCGATAGCCTTGTAATTGCAA  <  NC_000913/3026941‑3026804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.