New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1417458 =	49 (0.930)	3 (0.060)	3/264	6.6	6.2%	intergenic (‑72/+30)	recE/racC	Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
	?	NC_000913	1417483 =	45 (0.920)					intergenic (‑97/+5)	recE/racC	Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease/Rac prophage; uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATG  >  NC_000913/1417344‑1417624                                                                                                                                            |                                                                                                                                              atTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttct                                                                                                                                            <  1:860614/143‑1 (MQ=255)   tttttCGCTTTCCGTAACAGGAAGAGTGGTTTTGGGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTAtttcttt                                                                                                                                          <  1:740558/143‑1 (MQ=255)       tCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGa                                                                                                                                      <  1:416933/143‑1 (MQ=255)          cTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGAttt                                                                                                                                   >  1:616067/1‑143 (MQ=255)           tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTTCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTc                                                                                                                                  >  1:798844/1‑143 (MQ=255)           tttCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTc                                                                                                                                  >  1:770957/1‑143 (MQ=255)                  aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGTCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                                           <  1:469209/143‑1 (MQ=255)                  aaCAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAACGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCtttt                                                                                                                           <  2:766599/143‑1 (MQ=255)                           agTGGTTTTGTGCTGATTGTCTTTTAACCTCAACTCATATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  <  2:255263/143‑1 (MQ=255)                           agTGGTTTTGTGCTCATTGTTTTTTAACCTCACCTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  <  1:6457/143‑1 (MQ=255)                           agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  >  2:810205/1‑143 (MQ=255)                           agTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCAtt                                                                                                                  <  2:404830/143‑1 (MQ=255)                            gTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTg                                                                                                                 <  1:301316/143‑1 (MQ=255)                                       cTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCTATTCGAGtt                                                                                                      >  1:261269/1‑143 (MQ=255)                                        tCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTAAGATGACACCTTTTAATTTCATTGCCATTAGAGTTg                                                                                                     >  2:923534/1‑143 (MQ=255)                                          aTTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGCTCTTGCCGGATACACCCTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                                                   <  1:524036/143‑1 (MQ=255)                                           ttGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTCTCAGATTTCACCTTTTACTTTCATTGCAATTAGAGtgccca                                                                                                  >  2:804161/1‑138 (MQ=255)                                               tttttAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGaaa                                                                                              <  2:493272/143‑1 (MQ=255)                                                   gaaCCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCg                                                                                          <  2:475925/142‑1 (MQ=255)                                                           tcttaGATTAACATTGTTTTTGTTCAGGGAATGATTTTGCCGGATACACACTGTTCATAGCCTGCGCCATACTCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttt                                                                                  <  2:90003/139‑1 (MQ=255)                                                             tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                                                   <  2:775415/124‑1 (MQ=255)                                                             tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGcc                                                                                                   >  1:775415/1‑124 (MQ=255)                                                             tCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCtttttttt                                                                                <  1:9215/143‑1 (MQ=255)                                                                 aTTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGc                                                                            <  1:284863/143‑1 (MQ=255)                                                                      agttCGTTTTTTCTAGTGAATGATCTTGTCGGATACACACTTTTGATAGTTTGCGCCATACGCTTGCTATTTCTTTCACACTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCa                                                                       <  2:13951/141‑1 (MQ=255)                                                                       aTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCTATTAGAGTTGCCAGCAATTCGGCTTTTTTTTCTGCGGGccg                                                                      >  1:263538/1‑141 (MQ=255)                                                                        ttCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGa                                                                     <  2:395837/143‑1 (MQ=255)                                                                                cttCAGTGAATGATCTTGCCGGATACACGCTGTTTATGTCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCATCGTTTAATTTCATTGCAATTAGAGTTTCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTcc                                                             <  2:556408/142‑1 (MQ=255)                                                                                 ttCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCg                                                            <  2:361659/143‑1 (MQ=255)                                                                                    aGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCATCTTCTTTCCgtaa                                                         >  2:485615/1‑140 (MQ=255)                                                                                     gTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCCTACGCAGACTATTTCGTTCAGATTTCACCTTTTAATTTCATTGTCCTTTGAGTCGGCGGACCGTCGCCTTTTTTTTCTGCGGTTAGCTTCCTTCCGatat                                                        >  2:878149/1‑143 (MQ=255)                                                                                     gTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGatat                                                        <  2:810452/143‑1 (MQ=255)                                                                                      tGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATg                                                       <  1:826459/143‑1 (MQ=255)                                                                                        aaTGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGGTTCTTTCCGTTATGCa                                                     >  1:216031/1‑143 (MQ=255)                                                                                               ttGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTATTCTATGTTGGCTGATTCTTTCCGATATGCACCAGGca                                              >  1:900053/1‑143 (MQ=255)                                                                                                       ttctaccTGTTCATAGCCTTCGCCATTCTGTTGCTATTTCTTTCAGATTTCTCCTTTTAATTTCATTGCAATTAGTGTTTCCAGAAATTCGGCTTTTTTTTCTGCGTGCAGATTCTTTCCGATATGCACCAGGCACAtttttt                                      <  2:539497/137‑1 (MQ=255)                                                                                                       tACACACTGTTCATAGCCTGCGCCATACGCAGGTGTTTGCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACAtttttt                                      <  2:671747/143‑1 (MQ=255)                                                                                                        acacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTTCGGATAGATTCTTTCCCATATGCACCACTCACAttttttt                                     >  2:390223/1‑143 (MQ=255)                                                                                                         cacacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGC‑TTTTTTTCTGCGGGCAGGTTCTTTCCGATATGCACCAGGCCCATTTTTTTGa                                   >  1:247056/1‑143 (MQ=255)                                                                                                          acccTGTTCACAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATGAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGa                                   <  1:858465/140‑1 (MQ=255)                                                                                                          acacTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTACTTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGGTTCTTTCCGCTATGCACCAGGCACATTTTTTTgc                                   >  2:390158/1‑142 (MQ=255)                                                                                                                  cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCCATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCTGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTtca                           <  1:449085/143‑1 (MQ=255)                                                                                                                  cATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGACAGAAATTCGGCTTTTTTTTTTGCGGCTAGGTCCTTTTCGATAGGCCCCAGCCACCTTGCTTTTTCACTTtca                           >  2:303996/1‑143 (MQ=255)                                                                                                                                tacgagggCTATTTCTTTCAGCTTTGACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAACTCGGCTTTTTCTCCGGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAc             <  1:385718/137‑1 (MQ=255)                                                                                                                                tACGCAGACTATTTCTTTCAAAATGCACCTGCTAATTTCGTTGCAATAAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATAGGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTAc             <  1:323891/143‑1 (MQ=255)                                                                                                                                 aCGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGTCACCTTAATCTAGTGtttttgct            >  2:655744/1‑140 (MQ=255)                                                                                                                                  cGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGt           >  1:927501/1‑143 (MQ=255)                                                                                                                                   gCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGCTATGCTCCTGGCACATTTTTTTGTCCCCTTCTTCCATTTTTTTTACttt          >  1:61651/1‑143 (MQ=255)                                                                                                                                       gCTATTTCTTTCCGCTTTCACCTTTTGATTTCATTGCAACTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTGTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCt      <  2:272244/143‑1 (MQ=255)                                                                                                                                         tATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACTCGGCCCATTTTTTTGTCCCCTTCAGCTCGCGTTTTTTCGTTTCCTgc    >  1:130330/1‑142 (MQ=255)                                                                                                                                         tATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGa    >  1:842170/1‑143 (MQ=255)                                                                                                                                          aTTTCTTTCAGATTTCACCTTTTAATTTCATTGCACTTAGAGTTGCCAGAAATTCGCGGTGTTTTGCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGAt   <  1:218865/143‑1 (MQ=255)                                                                                                                                           tttctttcAGATTTCATCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATg  <  2:107585/143‑1 (MQ=255)                                                                                                                                           tttctttcAGATTTCACCTTTTGATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATg  <  2:210273/143‑1 (MQ=255)                                                                                                                                           tttctttcAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCCCATTTTTTTCACACCTTCATCAAGTGTTTTTTCGTTTCctgctg  >  1:579726/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                              ATTTTTTCGCTTTCCGTAACAGGAAGAGTGGTTTTGTGCTCATTGTTTTTTAACCTCAACTCAGATTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTTCTTTCAGATTTCACCTTTTAATTTCATTGCAATTAGAGTTGCCAGAAATTCGGCTTTTTTTTCTGCGGGCAGATTCTTTCCGATATGCACCAGGCACATTTTTTTGACACCTTCATCAAGTGTTTTTACGTTGCCTGATG  >  NC_000913/1417344‑1417624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.