Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,979,486	IS5 (+) +4 bp	intergenic (‑271/‑264)	insA ← / → uspC	IS1 repressor TnpA/universal stress protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	0 (0.000)	82 (1.550)	55/284	0.0	100%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1979489	0 (0.000)	63 (1.190)	41/284	0.3	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

CAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAT  >  NC_000913/2101613‑2101885                                                                                                                                          |                                                                                                                                         caGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGCTCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAACTTTCGCTTTCTTaaggcaggc                                                                                                                                    >  2:945439/1‑142 (MQ=255)     aCATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGa                                                                                                                                <  1:192485/143‑1 (MQ=255)            gTAACCTCGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCg                                                                                                                         <  1:82844/143‑1 (MQ=255)             tAACCCTGACCGAAGACATTTACACGCACCAACGCTCAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                        <  1:200043/143‑1 (MQ=255)                 cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGCATTTTTGTTTTATTAATGAAGGTGCGAATAAGCGGGaaa                                                                                                                    >  1:77186/1‑143 (MQ=255)                  ttGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGACTAAGCGGGGaaa                                                                                                                   >  2:102705/1‑143 (MQ=255)                  tcgATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                   <  1:602721/141‑1 (MQ=255)                    gATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTGATTAAGGGCGCTGCGAAGAGACGGCGAAAtt                                                                                                                 >  2:625734/1‑143 (MQ=255)                      tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                               >  2:380254/1‑143 (MQ=255)                      tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATAAGCACTAGGTGC‑CGCGTGAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                               >  1:696172/1‑143 (MQ=255)                       cGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAACTGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATCAAGGAAGGACCGAAGACGCGGGGAAgttgtt                                                                                                              >  1:642674/1‑143 (MQ=255)                         aaGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTATGAATTTTTGTTTTATTACGCAAGGTGCGACTAAGCGGGGGAGTtcttct                                                                                                            >  1:672219/1‑143 (MQ=255)                           tacATTTACACGCACAAATTCTGAAAAACGTACCAGCATAAATGATCCTGCGTACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                                                          <  2:264551/141‑1 (MQ=255)                            ccATTGACGCGCCCAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAT‑AAGAGATACTTTCTTTAGGAATTGTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                         <  2:660406/143‑1 (MQ=39)                             cATTTACACGCACAAAATCTGAAACACGTACCAGCATAAATGATCCTGCGCACCAACCCACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCggn                                                                                                        <  1:35241/143‑2 (MQ=255)                                ttACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTCAGGAAGGTGCGAGTACGCGGGGTAATTCTTCTCGGCTGa                                                                                                     >  1:73476/1‑143 (MQ=255)                                 tACACGCAAAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAATGACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAc                                                                                                    <  1:445282/143‑1 (MQ=255)                                    acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATATATACTCTCTTCAGGATTTTTTGATTTATTAAAGAAGGTGCGAATAAGCGGGGAAATACTTCTCGGCTGCCtaa                                                                                                 >  2:110425/1‑141 (MQ=38)                                    acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAGTAAGCGGGGAAATTGTTCTCGGCTGACTCa                                                                                                 >  1:379814/1‑143 (MQ=255)                                    acGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                 >  1:372699/1‑143 (MQ=255)                                      gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTAATAAGTATGTTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCact                                                                                               >  2:458310/1‑141 (MQ=255)                                      gCACAAAATCTGAAAAACGTACCAGCATAAATGATACTGCGCCCAAGTCAACAACCGTATCAG‑AATAGATACTTTATTATGGAATTGTTGTTTTATTTGAGATGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                               >  1:851107/1‑143 (MQ=37)                                        acaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTCAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGACTCAGtca                                                                                             >  1:382963/1‑143 (MQ=255)                                           aaaTCTGAAAAACGTACCAGCATAAATGACCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                          <  1:841307/143‑1 (MQ=255)                                              tCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                       >  1:872119/1‑143 (MQ=255)                                              tCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                       >  1:234355/1‑143 (MQ=255)                                                 gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                                                                    <  1:829458/143‑1 (MQ=255)                                                    aaaCGTACCAGCATAAATGATCCTGCGCACGAATCAACAACCGTATCAG‑AATAGATACGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                                                                 <  2:946707/143‑1 (MQ=255)                                                    aaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc                                                                                 <  2:757734/143‑1 (MQ=255)                                                        gTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                             <  1:715886/143‑1 (MQ=255)                                                         tcccAGCATCTATGATCCTGCGCTCCAACCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                                                            <  1:456327/141‑1 (MQ=255)                                                           ccAGCATAGATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg                                                                          <  1:241220/143‑1 (MQ=255)                                                                    aggagccTGCGCAGCAATCAACATACGTATCAG‑AATAGATACTTGCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                 <  2:879035/138‑1 (MQ=21)                                                                       aTCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                              <  2:594740/143‑1 (MQ=255)                                                                       aTCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                              <  1:822230/143‑1 (MQ=255)                                                                       aTCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                              <  2:137174/143‑1 (MQ=255)                                                                          ccgcgcACCAATCAACTACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTTGTACGGGTAATTTCCTCATGTTTGAGCCGATTTTTtctc                                                           <  2:783629/141‑1 (MQ=25)                                                                           tGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTcc                                                          <  2:889751/143‑1 (MQ=255)                                                                            gcgcACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGAGTGACACTGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                         >  2:926381/1‑143 (MQ=255)                                                                                    aTCACCAACCGTATCAG‑AATAGATACTTTCTTTAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                                 <  1:151482/143‑1 (MQ=255)                                                                                    aTCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGc                                                 <  2:270742/143‑1 (MQ=255)                                                                                       aacaacCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                              <  2:359595/143‑1 (MQ=255)                                                                                             cGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGCATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATGCCTTGAATCa                                        >  2:607525/1‑143 (MQ=255)                                                                                              gTATCAG‑AATAGATCTTTTTTTTGGGTATTTTTGTTTTATTAAGGAAGGTGGGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                       <  1:738856/143‑1 (MQ=17)                                                                                                 tCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCGTTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGccg                                    >  1:82903/1‑142 (MQ=255)                                                                                                    g‑AATAGATACTCTCTTTAGGAATTTCTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                 <  1:244098/143‑1 (MQ=255)                                                                                                       agagctACTTTCTTTATGAATTTTTGTTTTACTAAGGAAGGTGCGAATAAGCGCGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTGTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                               <  1:606298/138‑1 (MQ=14)                                                                                                           aTACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCTTTGAATCAGCCTATTTAGAcc                           >  2:788545/1‑143 (MQ=255)                                                                                                             gctttctttAGGGATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                         <  2:575589/142‑1 (MQ=255)                                                                                                             aCTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGTCTGACTCAGTGATTTCATTTCTTCATGTTTGAGCCGAGTTTTTCTCCCGTAAATGCCTTGAATCCGCCGACATAGACCGt                         >  2:625883/1‑143 (MQ=17)                                                                                                              ctttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGCGGCGATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGCGCCGATTGTTTCTCCCTTACATGCCTTGAATCTGCCTATTTCGACCGtc                        >  2:311776/1‑142 (MQ=17)                                                                                                               tttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGCATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                       >  2:813648/1‑143 (MQ=255)                                                                                                                 tgtttAGGAATTTTTGTTTGATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                     <  1:848226/141‑1 (MQ=255)                                                                                                                  ctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                    <  2:736142/143‑1 (MQ=255)                                                                                                                   ttttGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCTTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                   <  2:642674/143‑1 (MQ=255)                                                                                                                   tttAGTGATTTTTGTTTTATTAAGGAAGGTGCGAATATGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGTATCAGCCTATTTAGACCGTttcttc                   <  2:77186/143‑1 (MQ=255)                                                                                                                   tttAGAAATTTTTGCTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                   <  1:297763/143‑1 (MQ=255)                                                                                                                   gttAGGAATGTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                   <  2:399624/142‑1 (MQ=255)                                                                                                                     tAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                 <  1:894884/143‑1 (MQ=255)                                                                                                                     tAGGAATTTTTGTTGTATTAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                 <  1:856756/143‑1 (MQ=255)                                                                                                                      aGGAATTTTTCTTTTATTCAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc                <  1:102705/143‑1 (MQ=255)                                                                                                                             tttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg         <  1:380254/143‑1 (MQ=38)                                                                                                                             tttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGACTCGACTCAGACTATTTCGACCGTTTCTTCGCCATTTAAg         <  1:705263/143‑1 (MQ=11)                                                                                                                                gTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg      <  2:696172/143‑1 (MQ=35)                                                                                                                                 ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt     >  2:928147/1‑143 (MQ=34)                                                                                                                                 ttttATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt     >  1:117474/1‑143 (MQ=34)                                                                                                                                    tattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAt  >  1:363781/1‑143 (MQ=32)                                                                                                                                          |                                                                                                                                         CAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAG‑AATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAT  >  NC_000913/2101613‑2101885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.