Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_000913	2,765,412	Δ8 bp	8.4%	intergenic (‑259/+94)	yfjL ← / ← yfjM	CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2765420 =	86 (0.780)	7 (0.080)	6/352	NT	8.4%	intergenic (‑267/+93)	yfjL/yfjM	CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein
	?	NC_000913	= 2765411	84 (0.960)					intergenic (‑258/+102)	yfjL/yfjM	CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein

TCGCCAGCAGACAAGAAAAAATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765701‑2765420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgccatagtgccatagtgcGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAATTTTCGCA  <  NC_000913/2765411‑2765174                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGCCAGCAGACAAGAAAAAATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAGCCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGG                                                                                                                                                                                                                                                                                           <  2:315718/239‑1     CAGCAGACAAGAAAAAATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGC                                                                                                                                                                                                                                                                                        <  1:19916/238‑1         AGACAAGAAAAAATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCA                                                                                                                                                                                                                                                                                      <  2:1160561/236‑1              AGAAAAAATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCA                                                                                                                                                                                                                                                                              <  1:606438/239‑1                    AATTCTACGTCGAATCAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGC                                                                                                                                                                                                                                                                        <  2:7961/239‑1                    AATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGC                                                                                                                                                                                                                                                                        <  1:895105/239‑1                             TCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCC                                                                                                                                                                                                                                                               >  1:588339/1‑239                              CGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                                                                                                              <  1:882563/239‑1                                 AACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATA                                                                                                                                                                                                                                                            <  1:1115313/238‑1                                  ACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGAAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGT                                                                                                                                                                                                                                                          <  2:1220610/239‑1                                       ACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCA                                                                                                                                                                                                                                                      <  1:9270/238‑1                                       ACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTG                                                                                                                                                                                                                                                         <  2:795668/235‑1                                                   CCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGAGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCAGGCGGGGGCATTGTGCCATAGTTCAATAGCGCCATAGTGCCGTAGTGCGGTTGGt                                                                                                                                                                                                                                         >  2:573348/1‑238                                                                                     TGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTATCAGCTCTGAACTATTTGAAAACCAAAA                                                                                                                                                                                                         >  1:209041/1‑237                                                                                     TGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGGGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAA                                                                                                                                                                                                         >  2:1068866/1‑237                                                                                                                         AGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGG                                                                                                                                                                   <  1:1068866/239‑1                                                                                                                            CATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGATATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGTGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCA                                                                                                                                                                 <  1:573348/238‑1                                                                                                                                         TGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAAC                                                                                                                                                   <  1:322850/239‑1                                                                                                                                                     TCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGT                                                                                                                                       <  2:1183520/239‑1                                                                                                                                                                                                                                                  CCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAACTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTCGATCCCTGGTGATGATGCAGTGA                                          >  2:1134457/1‑239                                                                                                                                                                                                                                                  CCATAGTG‑CATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATTACTGGTGATGATGCAGTGA                                          >  2:116946/1‑238                                                                                                                                                                                                                                                   catgcTGCCATACTTCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTTATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGAGGCAGTGA                                          <  2:520960/233‑1                                                                                                                                                                                                                                                   CATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGA                                          <  1:347760/238‑1                                                                                                                                                                                                                                                    ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTAC                                                                                                                                                                              <  2:1028837/105‑1                                                                                                                                                                                                                                                    ATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTAC                                                                                                                                                                              >  1:1028837/1‑105                                                                                                                                                                                                                                                     TAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGAAGTGATCC                                       >  1:47717/1‑239                                                                                                                                                                                                                                                          CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTG                                  >  2:126567/1‑239                                                                                                                                                                                                                                                          CCATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTG                                  >  2:671274/1‑239                                                                                                                                                                                                                                                            ATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGA                                <  1:126567/239‑1                                                                                                                                                                                                                                                            ATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGA                                <  1:171287/239‑1                                                                                                                                                                                                                                                            ATAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGA                                <  2:126804/239‑1                                                                                                                                                                                                                                                             taggtCCATAGTGTCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATAGTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGAC                               <  2:432991/234‑1                                                                                                                                                                                                                                                             TAGTGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTAGTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCGTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGAC                               <  1:563357/239‑1                                                                                                                                                                                                                                                              AGTGCCATAGTTCCATAGTGCCATAGTGCGGGTGGCGGTCTCAGCTCTGAACTATTTGAAATCCAAAACCTTGATTAAGGCTGTGCCTATCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACTTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACT                              <  2:1136073/239‑1                                                                                                                                                                                                                                                                TGCCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGT                            >  1:768566/1‑239                                                                                                                                                                                                                                                                  CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGCTTGGACTGTG                           >  1:1010145/1‑238                                                                                                                                                                                                                                                                  CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTG                           >  1:547830/1‑238                                                                                                                                                                                                                                                                  CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTA                                                                                                                                            <  2:622066/125‑1                                                                                                                                                                                                                                                                  CCATAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTA                                                                                                                                            >  1:622066/1‑125                                                                                                                                                                                                                                                                  CCATAGTGCCATAGTGCCATAGTGCGGATGGCGGTCTAAGCTCTGTACTATTTGAAATCCAAAACCTTGATTAAGGCTGTGCCTACCTTACGCTAGTTGGGGCAGTATGTTATATAACCAAATTTGACGTCAGGGTTACAATATTTGTTGAATCATGCAACGCTTGTTACCTGCGAGCGTGACTGGCTGTGACGTATTTAGATCACTGGTGATGGTGCCTTGCTACGATTGGcatgtct                          >  2:1017223/1‑232                                                                                                                                                                                                                                                                     TAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCAT                       >  1:1147580/1‑239                                                                                                                                                                                                                                                                     TAGTGCCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTAATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCAT                       <  1:951957/239‑1                                                                                                                                                                                                                                                                          CCATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGGTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTACTTCGATCACTGGTGATGATGCAGTGATACGGTTGGTATGTGTCATAACA                   >  2:819441/1‑238                                                                                                                                                                                                                                                                           CATAGTGCCATAGTGCGGTTGGCGGTCTCAGCGCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTTAAGTATTTAGATCTCTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACAT                  <  2:473862/238‑1                                                                                                                                                                                                                                                                            ATAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATC                 >  1:48150/1‑238                                                                                                                                                                                                                                                                             TAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCAGATTGGACTGTGTCATAACATCT                >  2:521003/1‑238                                                                                                                                                                                                                                                                             TAGTGCCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACAAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGAATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCT                >  1:1153167/1‑238                                                                                                                                                                                                                                                                                  CCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAA          >  1:479122/1‑239                                                                                                                                                                                                                                                                                  CCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAA          >  2:1005711/1‑239                                                                                                                                                                                                                                                                                  CCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGAT                                                              >  2:530248/1‑187                                                                                                                                                                                                                                                                                  CCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGAT                                                              <  1:530248/187‑1                                                                                                                                                                                                                                                                                  CCATAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAACCTTGATACCTGCGACCGAGAATGGCTGTGAAGTCTTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAA          >  2:220809/1‑239                                                                                                                                                                                                                                                                                     TAGTGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAATTT       >  1:371752/1‑239                                                                                                                                                                                                                                                                                        TGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATT                                                                   >  1:485499/1‑176                                                                                                                                                                                                                                                                                        TGCGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAAACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATT                                                                   <  2:485499/176‑1                                                                                                                                                                                                                                                                                          CGGTTGGCGGTCTCAGCTCTGAACTATTTGACAACCAAAACCTTGGTTAAGGCTGTGCCTACCTTCCGTTAGTTGGGGCAGTATGTTATCTAACCAAATTAGTCGTCAGGGTTACAATATTTGTGGCGTCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGACGTATTTTGATTACTGGTGTTGATGTAGTGATCCGATTCGTCTGTGTCATTACATCTCCTTTATTTTtgta  >  2:642151/1‑235                                                                                                                                                                                                                                                                                          CGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTATACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGTAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTTGTCTGTGTCATAACTTCTCCTTAATTTTCGCA  >  1:698092/1‑239                                                                                                                                                                                                                                                                                          CGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCCGTGAGCCGATTGGACTGTGTCCTAACATCTCCTTAATTTTCGCA  >  2:265535/1‑239                                                                                                                                                                                                                                                                                          CGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGTTCCGATTGGACTGTGTCATAACATCTCCTTAATTTTCGCA  >  2:560745/1‑239                                                                                                                                                                                                                                                                                          CGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAATTTTCGCA  >  1:1105418/1‑239                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGCCAGCAGACAAGAAAAAATTCTACGTCGAAACAGAACGAGCAGAGAGCCCAAAACAAGCCATCATGATGAGCTATAAGGAGTGGGGTCCGGATGGGCAAGGCATCAACAATATAGAAAGCCATGAACACGCGATGTTGACATTGCTCAAAGAGCATCGAGATATGACCCTACCAACCAGGAAATAATGCGTGCAACTGTGTTTTATAATATCAAGTGTGATTACAATCGCTGGCGGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGCCATAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2765701‑2765420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccatagtgccatagtgccatagtgccatagtgccatagtgcGGTTGGCGGTCTCAGCTCTGAACTATTTGAAAACCAAAACCTTGATTAAGGCTGTGCCTACCTTACGTTAGTTGGGGCAGTATGTTATATAACCAAATTAGACGTCAGGGTTACAATATTTGTGGAATCCTGAAAAGCTTGATACCTGCGACCGAGAATGGCTGTGAAGTATTTAGATCACTGGTGATGATGCAGTGATCCGATTGGACTGTGTCATAACATCTCCTTAATTTTCGCA  <  NC_000913/2765411‑2765174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.