Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,014,202 T→C 16.5% I325T (ATC→ACC)  fliF → flagellar basal‑body MS‑ring and collar protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,014,2020TC16.5% 195.8 / 6.1 78I325T (ATC→ACC) fliFflagellar basal‑body MS‑ring and collar protein
Reads supporting (aligned to +/- strand):  ref base T (55/8);  new base C (2/12);  total (57/21)
Fisher's exact test for biased strand distribution p-value = 2.45e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGC  >  NC_000913/2013972‑2014435
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          
gATCCTGTCGCCTAATGTTGGTAACGGTAATATACACGCCCAGGTCACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCAc                                                                                                                                                                                                                                      <  2:323985/237‑1 (MQ=255)
 aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAGGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACg                                                                                                                                                                                                                                     >  1:183418/1‑237 (MQ=255)
 aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACg                                                                                                                                                                                                                                     >  1:548568/1‑237 (MQ=255)
 aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGc                                                                                                                                                                                                                                    >  1:993724/1‑238 (MQ=255)
 aTCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGc                                                                                                                                                                                                                                    >  1:1188859/1‑238 (MQ=255)
       tCGCCTATTGGTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGc                                                                                                                                                                                                                             <  1:998047/239‑1 (MQ=255)
                        cGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCACATCAAAATAACCGcc                                                                                                                                                                                                            >  2:1178190/1‑239 (MQ=255)
                                   aCGCGCAGGTTACGGCGCAGCCGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGCTGAATCTCATGCCGCGACTCGTTCACGCCAGCTTACTGAGAGCGAGCAAAGCGGTTCCGGTAATCCGGGCGGCGCACCGGGGGCGGTGGCGAAGCACCCGACACCTCCGAGTAAGGCGCCAACCAGCAAGCCTCCGGCCAATCAAAATCCCCGCAAACAGCAAGCg                                                                                                                                                                                                 >  2:877686/1‑239 (MQ=255)
                                   aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAACTCAAAATAACCGCCAGCCGCCGGCg                                                                                                                                                                                                 >  1:572454/1‑239 (MQ=255)
                                   aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCg                                                                                                                                                                                                 >  1:1147159/1‑239 (MQ=255)
                                   aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCg                                                                                                                                                                                                 >  1:628277/1‑239 (MQ=255)
                                   aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGACg                                                                                                                                                                                                 >  2:150833/1‑239 (MQ=255)
                                   aCGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTAACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAACTCACCGCCAGCAGCCGGcc                                                                                                                                                                                                 >  2:624868/1‑238 (MQ=255)
                                     gCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGa                                                                                                                                                                                                >  1:947274/1‑238 (MQ=255)
                                          ggTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCCCGCCTCCGGCAAATAAAACTAACCGCCAGAAGCAGGCGAGcaca                                                                                                                                                                                           >  2:694416/1‑237 (MQ=255)
                                          ggTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGcacc                                                                                                                                                                                           >  1:678451/1‑238 (MQ=255)
                                           gTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAACATAACCGCCAGCAGCACGCCAGcacca                                                                                                                                                                                          >  2:200913/1‑238 (MQ=255)
                                            ttcgggCGCCTCTGGACTTCGCAAGTAAAGAACAACCGAGAACACAGTATCGCCCTAAGGGTGATAACTCCCTTGCGGCGCTTCGTCCCGGCCAGTTAAATGAGAGCGAGCAACGCGTTCCCGTTTGTCCGGGGGGCGTACGGGGGGCGTTGCCAAACCACCCGGCCCCTGCAAATACCGCGCAACCCAGCACGCCCCCGACAAATAAAAATAACCGCCAGCAGCAGGCGAGcaccac                                                                                                                                                                                         <  2:945429/234‑1 (MQ=255)
                                               cGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCGGCCCGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc                                                                                                                                                                                     >  2:766977/1‑239 (MQ=255)
                                               cGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc                                                                                                                                                                                     >  2:1175346/1‑239 (MQ=255)
                                               cGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc                                                                                                                                                                                     >  1:528014/1‑239 (MQ=255)
                                                     aGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt                                                                                                                                                                               >  2:409228/1‑239 (MQ=255)
                                                     aGCTGGACTTCCCCAGTAAAAAACAAACGGAAGAACTGTATCTCCCTAACGGAGATGAATCTCACGCGGAGCTTCGTTCACGTCAGCTTAATGAGCGCGAGCAAAGCGGTGCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAACTAACAGCCAGCAGCAGGCGAGCACCACCCGCCTTAGt                                                                                                                                                                               >  2:107902/1‑239 (MQ=255)
                                                         ggACTGCGCCAGAAAAGAACAAAGGGAAGAAAAGCAGCCCCCAAAGGGTGATGAACCCCATGGGGCGCTTCGTCCACGCCAGCTAAAGGAGGGCGAGAAAAGCGTTCCCGGTTACCCGGGCGGCGTCCCGGGGGCTTTGTCAAACCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCCCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTggg                                                                                                                                                                            <  2:993724/238‑1 (MQ=255)
                                                            cTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGCGCACCACCAGCAATAGTGGGCcgc                                                                                                                                                                        >  1:451491/1‑239 (MQ=255)
                                                               cGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTa                                                                                                                                                                     >  1:345360/1‑239 (MQ=255)
                                                                       aaacaCAACCGGCAGACCGCTATCGCCTCACGGGTGCGGAATCCCAGGCGCGCTTCCGTCCGCACCCGCTTATGGAGGGCGGGCAAAGCGCTTCCGTTTCTCCGGACGGCGTCCCGGGGGCTGTGTCAAAACAACCGGCACCTGCGAATACCGCGCAAACCAGCCCGCCCCCGGCAAATCAAAATATCCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAg                                                                                                                                                             <  2:1147159/235‑1 (MQ=255)
                                                                               aCGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGa                                                                                                                                                     >  1:92983/1‑239 (MQ=255)
                                                                                    agaaCAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGGGGGCCGCGAAGCCCACAGCGGAATGAAACCa                                                                                                                                                >  2:317751/1‑239 (MQ=255)
                                                                                           tagcGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCCCGCCAGCTTAAGGAGGGCGAGAAAAGGGTTTCCGGTTACCGGGGCGGCGTCCCGGGGGCGTTGTCGAATCAACCGGCCCCTGCGAATAACGCGCCAATCAGCCCGCCTCGGGAAAATCAAAATAACCGCCAGCAGCAGGCGAg                                                                                                                                                                                               <  1:197700/182‑1 (MQ=255)
                                                                                           tATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACt                                                                                                                                          >  1:95919/1‑238 (MQ=255)
                                                                                             tCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATACCCGCCAGCAGCAGGCGAGCACCACCAGCAATATGGGGCCGCGTACCACAAAGCGGAGTGACACCACAACCTACg                                                                                                                                       >  2:636580/1‑239 (MQ=255)
                                                                                             tCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACg                                                                                                                                       >  2:238213/1‑239 (MQ=255)
                                                                                             tCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACg                                                                                                                                       >  1:605281/1‑239 (MQ=255)
                                                                                                cccTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAg                                                                                                                                    >  1:817158/1‑239 (MQ=255)
                                                                                                cccTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAg                                                                                                                                    >  1:558376/1‑239 (MQ=255)
                                                                                                     aCGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGc                                                                                                                                                                                     >  2:197700/1‑185 (MQ=255)
                                                                                                     aCGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGa                                                                                                                                >  1:824077/1‑238 (MQ=255)
                                                                                                     aCGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGa                                                                                                                                >  1:965458/1‑238 (MQ=255)
                                                                                                           atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAg                                                                                                                                    >  1:1189376/1‑228 (MQ=255)
                                                                                                           atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAcc                                                                                                                         >  1:368425/1‑239 (MQ=255)
                                                                                                           atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAc                                                                                                                          >  2:431717/1‑238 (MQ=255)
                                                                                                           atgaATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGCCGATCGCAcc                                                                                                                         >  1:302192/1‑239 (MQ=255)
                                                                                                           atgaATCCCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGCAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCAc                                                                                                                          >  2:1023006/1‑238 (MQ=255)
                                                                                                                   cATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCa                                                                                                                 >  2:283880/1‑239 (MQ=255)
                                                                                                                     tGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCAt                                                                                                                >  1:1021258/1‑238 (MQ=255)
                                                                                                                       cggctCTTCGTACCCGCCACAGTAGGGAGGGAGAGCAAAGCGGTTCCGGTTGAGCGGGCGGCTCGCGGGGGGCGTTGCGTAATCAACCGCCAGCGCCCAAAAGCGCACAAACCACCACCCCTCGGGAAAATCAAAATCACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCATTAACTACGAAGTCGATCGCACCATTCGTCATa                                                                                                               <  2:1188859/237‑1 (MQ=255)
                                                                                                                           gcTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGTTTACCCGGGCGGCTACCGGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAACCAGCACGCCTCCGGAAAATCAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCaaaa                                                                                                         <  1:317751/239‑1 (MQ=255)
                                                                                                                                      cGCCAGCGTAAGGAGAGCAGCCAAAGCGGCCCCGCTTCTCCGGGCGGCGCACCGGTGGCTTTGACGAACCAACCGCCACCTGCAAACAACCCCCCAATCAGCCCCCCCCGGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTggg                                                                                               <  2:532453/239‑1 (MQ=255)
                                                                                                                                            cTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCATATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGAtgt                                                                                        >  1:29374/1‑239 (MQ=255)
                                                                                                                                                      gcgagcAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGCCATACCACAATGAAAGTGGGCGATGTGCAACGTCTg                                                                              >  2:734030/1‑239 (MQ=255)
                                                                                                                                                       cgagcAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACg                                                                                  >  1:239564/1‑234 (MQ=255)
                                                                                                                                                         agcAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCa                                                                           >  1:663257/1‑239 (MQ=255)
                                                                                                                                                          gcAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCCAGCACCACCAGCACTAGTGGGCCGCGAAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCTCACCATTCGTCATACCAAAATAAACGCGGGCGACGTGAAACGTcgctc                                                                            >  2:628681/1‑233 (MQ=255)
                                                                                                                                                              aGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTcgc                                                                      >  1:1006191/1‑239 (MQ=255)
                                                                                                                                                               gCGGTTCCGGTTATCCTGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAGTCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCGGCAGGGGGGCACCCCCACCAATAGTGGGCCGCGTCGCACACAGCGGAATCAAACCAGAAACTACGGCGGCGATGGCCCCACTCGTCATACCACAACGAACGTGGGCTATGGGCAACGCCTGTCAGttgag                                                                     >  2:215902/1‑235 (MQ=255)
                                                                                                                                                               gCGGTTCCGGTTATCCGGGCGCCGTACCGGGGGCGTTGACGAAACAACCGGCACCTGCGAATAACGCGCCAACCAGCACGCCTCCGACAACTCAAAATAACCGCCAGCAGCAGGCGAACCCCACCAGCTATAGTGGGCCACGTAGCACACGGCGGACTGAAACCCGTAACAACAAAGTCGATCCCACCATTCGTCATACCAAAATGAACGTCACCGATGGTGCACGTCTGTCAgccacg                                                                     >  2:908492/1‑234 (MQ=255)
                                                                                                                                                                    gccGGTTACCCGGGGGGCGCGCCGGGGGCGTGGCCAAAACAACCGACAGCTGCGAATAACGCGCCAACCAGCACGCCTCCGGAAAACAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGGCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCg                                                                 <  2:1006191/237‑1 (MQ=255)
                                                                                                                                                                         ttacggggggggCGCACCGGGGGCGTTGTCGAATCAACCGCCACCTGGGAAGAACGCGCCAACCGGCACGCCTCCGGAAAATCAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAACACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCGCCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCgtggtg                                                            <  1:745/232‑1 (MQ=255)
                                                                                                                                                                         ctggccggggggcgtccggggggcgtTGCGCAACAACCCGCCACCCGCCAACACCCGGCAACGCACCACGCCCCGGAAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCgtggtg                                                            <  2:92983/234‑1 (MQ=255)
                                                                                                                                                                              cGGGGGGCGGCCCGGGGGCGTGTGCGAACCACCCGACACCTCGGAATAACGCGCCAATCAGCACGCCCCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTAc                                                      <  2:1110410/239‑1 (MQ=255)
                                                                                                                                                                              cGGGCGCCGTACCGGGGGCGTTGTCGAACCACCCGGCACCTGCAAATAACGCGCAAATCAGCACGCCTCCGGAAAATAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTAc                                                      <  1:176946/239‑1 (MQ=255)
                                                                                                                                                                                gggggcgTACGGGGGGGGTTGTCGAATCACCCGGCACCGGAGAATAACGCGCCAACCACCCCCCCCCCGGAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACa                                                     <  1:150833/235‑1 (MQ=255)
                                                                                                                                                                                 gcggcgTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACaaa                                                   >  1:1119025/1‑239 (MQ=255)
                                                                                                                                                                                  cgggcacccGGGGGCGTGGCCGAACCAACGGGCACCGCGCAATAAGGCGCCAACCAGCACCCCTCGGGAAAATCAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACaaa                                                   <  2:963507/231‑1 (MQ=255)
                                                                                                                                                                                      gTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGACTAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGCATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGCCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTAAAAAACCtt                                              >  2:881665/1‑239 (MQ=255)
                                                                                                                                                                                         ccGGGGGCGTTGCCGAATCACCCGGCCCCTGCGAATACCGCGCAACTCAGCCCCCCCCGGGAAAAAAAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGcc                                           <  2:817158/239‑1 (MQ=255)
                                                                                                                                                                                                gCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGGGAATTACAAAACCTTACCAGATg                                      >  1:679995/1‑238 (MQ=255)
                                                                                                                                                                                                  cttGTCCACTAAACCGGCACCTGACAATAACGCCCGTACCACCCCGCCCAGGGCAAAGAAAAATGACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCGCCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTCGCCAGATGGc                                    <  2:346437/237‑1 (MQ=255)
                                                                                                                                                                                                   ttGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCaa                                  >  1:674177/1‑239 (MQ=255)
                                                                                                                                                                                                    tGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCACAATGAACGTGGCCGATGTGCAACGTCTCCCAGTCGCGGTCGCGGGGAATTACAAAACCCTGCCAGATGGcca                                  >  2:535514/1‑236 (MQ=255)
                                                                                                                                                                                                    gaccGAAACACCCGGCACGTGCGAAGAACGCGCAAACAAGCCCGCCTCGGGCAAATAAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCaa                                  <  2:239564/235‑1 (MQ=255)
                                                                                                                                                                                                            aaaCCGGCCCCTGCGAACAACGCGCAAACCACCACCCCCCCGAAAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGcc                         <  2:368425/238‑1 (MQ=255)
                                                                                                                                                                                                                            gaacaaccggacAACCAGCACCCCCCAGGCAAATGAAAAAAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGaa            <  2:309339/227‑1 (MQ=255)
                                                                                                                                                                                                                                  cgcgCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTTGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGa     >  1:404497/1‑239 (MQ=255)
                                                                                                                                                                                                                                  cgcgCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGa     >  1:179193/1‑239 (MQ=255)
                                                                                                                                                                                                                                  cgcgCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGa     >  2:932773/1‑239 (MQ=255)
                                                                                                                                                                                                                                     gcCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGACCAGATGAAGc  >  1:1160710/1‑239 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          
GATCCTGTCGCCTATTGTTGGTAACGGTAATATTCACGCCCAGGTTACGGCGCAGCTGGACTTCGCCAGTAAAGAACAAACGGAAGAACAGTATCGCCCTAACGGTGATGAATCTCATGCGGCGCTTCGTTCACGCCAGCTTAATGAGAGCGAGCAAAGCGGTTCCGGTTATCCGGGCGGCGTACCGGGGGCGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGTAGCACACAGCGGAATGAAACCAGTAACTACGAAGTCGATCGCACCATTCGTCATACCAAAATGAACGTGGGCGATGTGCAACGTCTGTCAGTCGCGGTCGTGGTGAATTACAAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGC  >  NC_000913/2013972‑2014435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: