| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,782,919 | T→C | 30.8% | D248G (GAT→GGT) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,782,919 | 0 | T | C | 30.8% | 59.4 / 5.7 | 52 | D248G (GAT→GGT) | gpsA | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| Reads supporting (aligned to +/- strand): ref base T (16/15); new base C (3/11); total (25/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCAGCA > NC_000913/3782689‑3783153 | aTGCTGCCTCGCGGGTGTTTTTCCCGCATTATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCCCCTGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCCCCTGACAAATCTTCTCCTGCGCGTTTTGTCCACCCATGCCCTGACCG‑AGCATCATGCCAAACCGGCGG‑TTCCGCG‑CC‑TGGTTG‑TCGGTACAGGTAACCCCCAGATCGCCAAGc < 2:975316/239‑1 (MQ=255) tgctgcCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGGTG‑TCGGGACAGGGAAACACCAGATAGcccaac > 1:883398/1‑234 (MQ=255) ccTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACCGG‑CC‑CCGTTT‑TCGGTGAAGGCAAACACCAGAACACCAAGACCCGc > 2:327306/1‑238 (MQ=255) cTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑GC‑TGGTTG‑TCCGCAAAGGGAAGCACCAAAACGCCGAGCCCCGcc > 1:471190/1‑238 (MQ=255) cTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTAAGCG‑GC‑TGGTTG‑TCGGTACAGGGAAGCACCAAATCCCCAAGCcccccc > 1:688456/1‑238 (MQ=255) gTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTTCCGATAAGCACCAAACCGCCCAGCCCCGCCC‑TGCCCCTac > 1:608963/1‑238 (MQ=255) taCTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTTCGCG‑AC‑TGGTTT‑TCGGTACACGGAAACACCAGAACGCCAAACCCCCCCC‑AGCCCAAAAAGGGGGcggaggcgtga > 1:609440/1‑228 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGCCTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAACCGGCGG‑TTTCGCC‑CCACGGTTG‑T‑GGCGCCGGAGATCACCACATCGCCAATGCCCGCCC‑TGCCCCTAAACGTGCCAGGGGCGGCcccccg > 2:921255/1‑236 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCGAAGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTT‑TCGGGACCGGGAAGCACCAAATCGCCAAACCCCGCCC‑TGCCCATAAAGGGGGGAGGGTCGGGAcccc > 1:11189/1‑237 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGGTTTACG‑G‑AC‑TGGTTG‑TCGGCACAGGTAAGCACCAGACCACCCAGCCCCCCCA‑GCCCCCTAAATGGGGCAGCGTGGGCAacccc > 2:598322/1‑236 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTTACCG‑GC‑CTGTTG‑TCCGTAAAGGGAAACACCAAAACCCCAAACCCCCCCACCGCCCTAAAAGGGGGCGGGGCGGGCACCCa > 2:1092939/1‑238 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑GC‑TGGTTG‑TCGGTACAGGTAAACACCAAATCGCCAAGCCCCCCCC‑TGCCCCTAAAAGGGGCAGGGGCGGCCCCCAgc > 1:68709/1‑239 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGGACAGGTAAGCACCAAATCGCCAAGCCCCCCCA‑CGCCCATAAAGGGGGGACGGGCGGGACCCAgc > 1:189451/1‑239 (MQ=255) gATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGGTG‑TCGGGGCAGGGAAACAACAAATCCCCAAACCCCGCCA‑TGCCCCTAAAAGTGGCAGGGGCGCGAcccca > 1:967795/1‑236 (MQ=255) aTAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGGACAGGTAAGCACCACAACGCCAAACCCCGCCA‑TGCCCCTAAAAGGGGCAGGGGCGGCACCCacc > 1:405357/1‑236 (MQ=255) tAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTTCGCC‑CC‑TGGTTG‑TTGGGACAGGTAAGCACCAAATCGCCAAGCCCCGCCC‑TCCCCTCAAAGGCGGCACGGTCGGCACCCAccg > 2:63457/1‑238 (MQ=255) tAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGCGCAGGGAAACACCAGATCGCCAAGACCCGCCA‑TGCCCATAAAGGTGGCATGGTTGGATCCCacct > 1:320022/1‑235 (MQ=255) tATGGGCATTTCAGCGCCGAAGCGTTGCGCCATTCCTCGGACTCCTTTCGTTTTGCGGTACCCTCCCACCCCCTGACCAATCTTCCCCGGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCTACATGCCAAACCGGCGG‑TTACGCG‑CC‑TGTTTT‑TCGGTACAGGTAGGCCCCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGAcgc < 2:467317/238‑1 (MQ=255) ttCAACGCCGAAGCGATGCGCCAGTTCGAGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TCTCGGC‑AC‑GGGTTT‑TCTCTGCAGGGAAGCACCAAACCACCACGACCCGCCA‑TCCCCCCAGAGCGGGCAGGGGCCGCCACCAGCCGCCCC‑CCCAGAcgccgcacatca > 2:555810/1‑229 (MQ=255) tCACCGCCGAGGCGATCCGCCAGTGCGCGGCCTTCTTCGTTATTGCGGTGGCCTTCCACCACCTGACCATTCTGCTCCGGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGGG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGACCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTcagc < 2:703578/239‑1 (MQ=255) tCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTcagc < 1:1093905/239‑1 (MQ=255) ggccttcttTCGTATTGCGGTAGCCTCCCACCACCTGACCAATCTCCTCCTGCGCGCTTTGTACACCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTGCGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGACCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTAcg < 1:508833/235‑1 (MQ=255) tttCGTATTGCGGTAGCCTCCCCCCCCCTGCCCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCg < 1:941838/239‑1 (MQ=255) gTATTGCGGTAGCCTTCCACCCCCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCAGGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGACCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCAcc < 1:63457/239‑1 (MQ=255) tATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCGCAC‑TGG‑GG‑TCCGTCAAAGGAAGCACCAAAACGCCAAGCCCCGCCC‑TGCCCCTCAAGGGGGGAGGGGCGGGACCAAACGCCCCACCCAAGAC‑CGACAATTCAGACAGCCCCCAGGGGAGCAGCCCCGCACACCCCTTCGCCCCa > 2:1072251/1‑239 (MQ=255) tctccTTCCCCCCCCTGACCAACCTTCCCCGGCGCGCTGTGTACATCCAGGCCCTGACCG‑GGCACAACCCCAAACCGGGGG‑TTCCGCG‑TC‑TGGTTG‑TGGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGa < 2:405357/235‑1 (MQ=255) ccccccggACCAATCTTCTCCTGCGCGCGTTGTACACCCAGGCCCGGCCCG‑ACCATCAGGCCAAAACGGCGG‑TTCCGCG‑CG‑TGTTTG‑TCGGTACAGGTAAGCCCCAGCTCCCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGa < 2:1100751/232‑1 (MQ=255) ccccccTGCCCAACCTCCCCCGGGGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAACCGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGa < 1:968163/235‑1 (MQ=255) ccccccTGACAATGCTCCTCCGGCCCGCTTTGACCCTCCATCCCCGGACCA‑GCCATCAGGCCAAACCGGGGG‑TTCCGCG‑CC‑GGGTTG‑TGGGTACAGGTAAGCGCCAGACCCCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGa < 2:109317/235‑1 (MQ=255) aTCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCAAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCAcc < 1:231348/239‑1 (MQ=255) cgcgcTTGGTACATCCAGGCCCTGACCG‑AGCATCAGGCCAAACCGGCGG‑TTACGCG‑AC‑GGGTTC‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATa < 1:527888/238‑1 (MQ=255) aTCCCTGCCCGTACCG‑AGCCTTAGGCCAACACGCGGG‑TGAGGGG‑AC‑‑GGTTGCTCGTTACAGGTACGCACCGGATCCCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcg < 2:751799/239‑1 (MQ=255) aTCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcg < 1:342028/239‑1 (MQ=255) aTCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑CCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACcg < 1:1092939/239‑1 (MQ=255) ccG‑AGCATCATGCCAAAGCGGCGG‑TTACGCG‑CC‑TGTTTG‑CCGGTACAGGTAAGCCCCAGACCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTg < 1:495532/239‑1 (MQ=255) ggccatcagGCCAAACCGGCGG‑TTCCGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGACCCCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa < 1:595791/236‑1 (MQ=255) cgtaagcccAAACCGGCGT‑TTACGCG‑AC‑GGTTTG‑CCGGTACGGGAAAGCCCAAGACCGCCAAGCACCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCa < 1:416768/229‑1 (MQ=255) tGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCCCCAGAGCGCCAGGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATg < 1:921255/239‑1 (MQ=255) ggcgg‑TTCCGCG‑AC‑GGGTTG‑GCGGTGCAGGTAAGCCCCAGACCGACAGGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGa < 1:606922/239‑1 (MQ=255) gcg‑GC‑TGGTTG‑TCGTGACAGGTAAGCCCCAGATCGCCAACCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTaa < 1:598322/239‑1 (MQ=255) tgccGGTGCAGGAAAGCACCAGACCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGaa < 1:81510/235‑1 (MQ=255) gcaaGCCCCAGACCCCCAACCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGACCCCAGCGCCGCA‑CCAAGCCGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAGCGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCg < 2:11189/235‑1 (MQ=255) tAAGCCCCAGATCCCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCg < 1:1072251/236‑1 (MQ=255) aGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGt > 1:517045/1‑238 (MQ=255) cacaAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGa < 1:1171738/128‑1 (MQ=255) cACCAGCTCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCATCGCCGTACGCGCATTCGCACCAAACCCGCTACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCCCGCCACTGAAATCCGGCTTGCTGTAAACCCGGAGACTTTTGCCGCAGTgca > 2:388047/1‑239 (MQ=255) cACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGa > 2:1171738/1‑128 (MQ=255) cACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGCGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCCGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACCTCCCCGCACCAATGGCAATAACGTTATTCACCGCCCCGCCATCCTGCACGCCACTGAAATCCGGATTGCTGTAACCTCGGAAACTTTTGCCGCAGTgc > 2:975882/1‑238 (MQ=255) ccAGACCGCCACGCCGCGCCA‑TGGCCCGAAAGGAGCCAGAGTCGGGTCTCAGCGCCGCA‑CCAAGACGCGCCATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAATCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCGGCCAAGCTGGACGCCGATGAAATCCGGATTGCTGTAAACGCGGAATCTTTTGCCGGAGTgcagc < 2:250488/239‑1 (MQ=255) gATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgcagca > 1:226212/1‑237 (MQ=255) gATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGCACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGCTTGCTGTAACCGCGGACACTTTTGCCGCAGTgcggca > 2:151646/1‑237 (MQ=255) gATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGACACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTgcagca > 2:257281/1‑237 (MQ=255) | ATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCATTTCAACGCCGAAGCGATGCGCCAGTTCGCGGACTTCTTTCGTATTGCGGTAGCCTTCCACCACCTGACCAATCTTCTCCTGCGCGCTTTGTACATCCATGCCCTGACCG‑AGCATCATGCCAAAACGGCGG‑TTACGCG‑AC‑TGGTTG‑TCGGTACAGGTAAGCACCAGATCGCCAAGCCCCGCCA‑TGCCCATAAAGGTGGCAGGGTCGGCACCCAGCGCCGCA‑CCAAGACGCGACATTTCAGCCAGCCCACGGGTGATCAGCGCCGTACGCGCATTCGCACCAAAACCGATACCGTCGGACATCCCCGCACCAATGGCAATAACGTTTTTCACCGCGCCGCCAAGCTGCACGCCAATGAAATCCGGATTGCTGTAAACGCGGAAACTTTTGCCGCAGTGCAGCA > NC_000913/3782689‑3783153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |