New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3150551 =NA (NA)3 (0.050) 3/262 9.7 NA intergenic (+5/+267) yghA/exbD putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex
?NC_000913 3150580 = NA (NA)noncoding (27/255 nt) RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites
Rejected: Coverage evenness skew score above cutoff.

GCTCAATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3150702‑3150551
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGT  >  NC_000913/3150580‑3150720
                                                                                                                                                                                                                                                                                                     
GCTCAATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACA                                                                                                                                                        >  1:522117/1‑143
  TCAATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGGGAATTCACAATGATGCCCGGTTGCTTTTCACAAC                                                                                                                                                      >  1:847886/1‑143
    AATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCG                                                                                                                                                    >  1:991338/1‑143
          TGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGCATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATACACAATAATGCGCGGTTGCTTTTCACAAACGAGCATa                                                                                                                                              >  1:57316/1‑142
          TGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCAgt                                                                                                                                              >  1:998416/1‑141
                                                                                             GCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCGTCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTGATCCGCCTACAAACGCATGAAAATCAAACATGTTGCAATAGAT                                                           >  2:1088975/1‑143
                                                                                                        TAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAGCGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTACACTAGACTTTGTAGGCat                                                >  2:1031969/1‑141
                                                                                                                               CCGGTTGCTTTTCACAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGACTTATCAGACTACAAACGCATGAAGATTCAAAATGTTGCAATAGATTTTGTAGGAGTGATAAGCGTAACGCATGAGGCAa                         >  2:136220/1‑142
                                                                                                                                             CAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGC           >  1:1145941/1‑143
                                                                                                                                              AACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCATCATGTTGCAATAGATTTTGTTGGCCTGATAAACGTAGCGCATCAGGCATTGAGCACCTAATGCC          >  1:43859/1‑143
                                                                                                                                               ACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGCTTTTGTTCTCCACATAATCGTTGCGCCTCACCCATTGAGCACCTCATGCCG         >  1:1188282/1‑143
                                                                                                                                                CCGGGCATCCTTTTGAATTCCCTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGG        <  2:325940/143‑1
                                                                                                                                                 ccGGCATCATTGTGAAATCACGCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGA       <  1:602113/141‑1
                                                                                                                                                 CGGGCATCATGGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCATATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGA       <  1:223986/143‑1
                                                                                                                                                  GGGCATCGTTGTTATGCCACTCGTACCTGAGGCGGCGAAAGCGCCTTATCCGCCTACAAACGCATGAAGATACAACATGGTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGAT      <  1:372287/143‑1
                                                                                                                                                  GGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCTTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGAT      >  1:676520/1‑143
                                                                                                                                                   GGCATCATTGTGAATTCACACTCACGAGATGGGGCGAACACGCCGCATCCGCCTACAAACGCATGAAGATTCAACATGTTGCCATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATG     <  1:443824/143‑1
                                                                                                                                                    GCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGC    <  1:900364/143‑1
                                                                                                                                                      ATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGT  <  2:10082/143‑1
                                                                                                                                                                                                                                                                                                     
GCTCAATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3150702‑3150551
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaccgggcatCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGT  >  NC_000913/3150580‑3150720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.