New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1097456 =	10 (0.150)	3 (0.050)	3/268	9.9	24.6%	intergenic (+627/+109)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097476 =	9 (0.140)					intergenic (+647/+89)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

ATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACAC  >  NC_000913/1097338‑1097613                                                                                                                                           |                                                                                                                                          ataCGAAAGAAAAGCCCGTACTTTCGTAGGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa                                                                                                                                       <  1:1110978/143‑1 (MQ=11) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCCGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGaa                                                                                                                                       >  1:210294/1‑143 (MQ=11)                                                                                                              cGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGCCGGTGAGGGGGGGGATCGAAcc                          >  2:155565/1‑143 (MQ=12)                                                                                                               ggTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTCAATATGGCGGTGAGGGGGGGATTCGAAccc                         >  1:13690/1‑143 (MQ=25)                                                                                                                     tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCGGGGGGGAGTCGAACCCCCGATa                   >  1:859865/1‑143 (MQ=255)                                                                                                                        aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAACAAAAGCCCGTACTTTCGTACGAGCTCTCTTTTAAATATGGCGGTGCGGGGGGGATTCGAACCCCCGCTACGt                >  2:250031/1‑143 (MQ=14)                                                                                                                           tGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc             >  1:899007/1‑143 (MQ=255)                                                                                                                            ggCTGTCGCCAGTTGTCGAACCCCGGTGGGGGCTTCTCACCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCATCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTgtc            <  2:897688/143‑3 (MQ=255)                                                                                                                                  cGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCCATATACGAAAAAGCATCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAGTCGACCCCCCGGCACGTGGccctggtc      >  2:551817/1‑137 (MQ=11)                                                                                                                                     cAGCTGGCGAACCCCGGTGGGGGCTTCCCATCCCCCCGGGGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGTGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATacaca   <  1:64576/143‑1 (MQ=17)                                                                                                                                      aGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCTGGGCGGCTTCGCACCCCCGATACGTTGCCGTATacacac  >  1:330836/1‑143 (MQ=17)                                                                                                                                           |                                                                                                                                          ATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACAC  >  NC_000913/1097338‑1097613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.