New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1436228	58 (0.870)	3 (0.050)	3/268	9.9	5.2%	coding (666/1134 nt)	ompN	outer membrane pore protein N, non‑specific
	?	NC_000913	= 1436244	55 (0.880)					coding (650/1134 nt)	ompN	outer membrane pore protein N, non‑specific
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTACCTTGATACTGCA  >  NC_000913/1436108‑1436385                                                                                                                                          |                                                                                                                                              aCGCGTTTCTGATCACATGGTTGCCAGGTAAATATTGTTAGCGTCGTCTTTTAGCCCAGCAGTCCACGCGTCGGCTTTATCACCACCCGCCGCAGT‑ATGGTTATGAACCCGATCGGTGCGGTCAGAAGAGGTGTATGCCGCAc                                                                                                                                         <  2:663219/143‑1 (MQ=255)     gTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGACTGCTTTATCACCACCCGCCACACG‑ACCGTTAACTTAGTCATTGATGTGTGCAGAAGAGGTGTATGACGCAcaaag                                                                                                                                     >  2:414598/1‑139 (MQ=255)       ttCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGCGGTGTATGCCGCACCAgcgc                                                                                                                                   >  1:259678/1‑143 (MQ=255)       gtCTGACTGCATGGTTGCCAGGTAAATATTGTTGGCATCGTATTTTAGCCCAGGAGTCCACGCGTCTGCTTTATCACCAGCCGCCGCGGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAgcgc                                                                                                                                   <  2:1005563/142‑1 (MQ=255)           gAATACATTGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCCCCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTaaa                                                                                                                               <  2:541302/143‑1 (MQ=255)                 aTGGTTGCCAGGTAAGTTTTGGTAGCTTCGTATTGTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCGCCCGCCGCAGT‑ATGGTTAACCTGGTCATTTGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCAt                                                                                                                         <  2:1007810/143‑1 (MQ=255)                 aTGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCAt                                                                                                                         >  1:1063090/1‑143 (MQ=255)                            gTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTCAAGCCCCTGCCTAcatcat                                                                                                              >  1:1918/1‑143 (MQ=255)                            gTAAAGAGTGTTAGCATCGTATTGTAGCCCAGCAGTCCTCGCTTCAGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCat                                                                                                              <  1:676130/143‑1 (MQ=255)                            ctAAATATCGCCAGCACCGCATGTTAGCCCAGCAGTCCACGCGCCTGCTTTACCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCat                                                                                                              <  1:42178/142‑1 (MQ=255)                             tAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCata                                                                                                             >  1:425143/1‑143 (MQ=255)                                    tGTTGGCACCGTATTTTAGCCCAGCGGTCCACGCGTCTGCTTTTTCACCGCCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTtgtg                                                                                                      <  2:683145/143‑1 (MQ=255)                                      ttAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTCAAGCCCATGCCTAAATCGTCTGTTGTGGa                                                                                                    >  2:706695/1‑143 (MQ=255)                                      tgtccATCGTCTCTCAGCCCATCACTCCTCGCGTCTGCTTTAAC‑CCACGTTCGCCAATGACGGCTAACCTGACCATTCGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGa                                                                                                    <  2:533395/139‑1 (MQ=255)                                        aGCATCGTATTTTAGCCCAGCAGCCCTCGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGaaa                                                                                                  <  2:130970/143‑1 (MQ=255)                                         gCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAg                                                                                                 >  1:30635/1‑143 (MQ=255)                                         gCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGATGTGGAAAg                                                                                                 >  1:475977/1‑143 (MQ=255)                                                      gCCCAGCCGTCCACGCGTCGGCTTTATCGCGACCCGCCGAAGT‑ATGGTTAACCTGGACATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCCTGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCa                                                                                    <  2:93230/143‑1 (MQ=255)                                                       ctcagcagTCCACGCGTCTGCTTTATCACCACGCGCCGCAGT‑ATGTTTAACCTGCTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTCAATCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCAc                                                                                   <  2:457216/141‑1 (MQ=255)                                                          agcagTCCCCGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGt                                                                                <  1:934557/143‑1 (MQ=255)                                                          agcagTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGGCCCCAGCCGTCGCCGt                                                                                >  1:392768/1‑143 (MQ=255)                                                           gcagCCCCCGCCTCTGCTTTATCCCCACCCGCCGCATT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTACATCATATGTTGTGGAAAGACCCCAGCCGTCACCGtt                                                                               <  1:776379/143‑1 (MQ=255)                                                                ccACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCAt                                                                          <  1:1059124/143‑1 (MQ=255)                                                                 gaCGCGTCTGCATTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATg                                                                         <  2:1062020/142‑1 (MQ=255)                                                                      gTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAGCCTGGTCATTGGTGCGGTCAGAAGAGATGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATTGCGaa                                                                    <  2:998305/143‑1 (MQ=255)                                                                            tttATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGAACCCAGCCGTCACCGTTTACATGGCGAAGAtacc                                                              >  2:120749/1‑140 (MQ=255)                                                                            ttgaTCACCTCCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCAc                                                              <  1:754036/140‑1 (MQ=255)                                                                              tATCACCACCCGCCGCAGT‑ATGGTCAACCTGGTCATGTGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCActt                                                            <  2:431280/143‑3 (MQ=255)                                                                                tcatcaCCTTCCGCAGT‑AAGGTTAACCCGGTCATTGGTGCGGGCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTcc                                                          <  1:1063164/143‑1 (MQ=255)                                                                                   ccaccCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGGTGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCCGCCGTCACCGTTTTCATGGCGAACATCCCGTCCgtt                                                       >  1:826224/1‑143 (MQ=255)                                                                                      gccgccgCAGT‑ATGGGTAACCTGGTCATTGGTGCGGTCAGAAGGGGTGTATGCCGCACCAGCGCTAAAGCCCATGTCTCTCTCCTATCTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                                    <  1:819810/142‑1 (MQ=255)                                                                                      cccGTCGCATT‑ATGGTTAACCTGGTCAATGGTGCGGTCAGAAGAGGTGTATGCCGAACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                                    <  1:296808/143‑1 (MQ=255)                                                                                      cccGCGGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGGCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                                    <  2:1137382/143‑1 (MQ=255)                                                                                      cccGACGCAGG‑TTGCTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                                    <  2:772489/143‑1 (MQ=255)                                                                                       ccgccgCGGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGttgttg                                                   <  2:1000703/143‑1 (MQ=255)                                                                                       ccgccgCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGttgttg                                                   >  1:616085/1‑143 (MQ=255)                                                                                       ccgccgCAGT‑ATGCTGACCCTGGGCAGTGGTGCGGTCAGAAGGGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGttgttg                                                   <  2:281439/143‑1 (MQ=255)                                                                                         gccgcAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGCTTTCATGGCGAACATAACGTCCGTCGTCggg                                                 >  2:518014/1‑142 (MQ=255)                                                                                                t‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTCGCTGGTTCCGTcc                                          >  1:438481/1‑143 (MQ=255)                                                                                                    ggTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTGGTTGGTGCCTTCCTGa                                       >  1:30909/1‑143 (MQ=255)                                                                                                    ggTTAACCTGGTCAGTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACATCCGTTGTTGGTGCCTTCCTGa                                       <  1:1153489/143‑1 (MQ=255)                                                                                                     gTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGAc                                      <  1:575854/143‑1 (MQ=255)                                                                                                               tCATTGGGGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGc                            <  1:555935/143‑1 (MQ=255)                                                                                                                  ttGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGCCTcc                         >  1:1122836/1‑143 (MQ=255)                                                                                                                     gggCGGTCAGAAGAGGTGTATGACGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCTTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTc                      <  1:379237/141‑1 (MQ=255)                                                                                                                        cGGTCAGAGGGGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCgtt                   <  2:917435/143‑1 (MQ=255)                                                                                                                        cGGTCAGAAGAGGTGTATGCCGCACAAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCgtt                   <  2:1017863/143‑1 (MQ=255)                                                                                                                        cGGGCAGAAGGGGTGTATGGCCCACCGGTGTTGTATCTCATGCCCAAATCATATGTTGTGTAAAGTCCCCCGCCGTCATCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCgtt                   <  2:719762/143‑1 (MQ=255)                                                                                                                          gTCAGGAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTCACCATTACTGGCGCcgtcgtcgt                 >  2:996735/1‑143 (MQ=255)                                                                                                                          gTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACACGACGTCGGTTGTTGGTGCCTTCCGGACGATTTCTGGCTCCTCTgttgg                 >  1:965556/1‑142 (MQ=255)                                                                                                                           tCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGCCCGTTGTTGGTGCCTTCCTGACCACTACTGGCCCCTTCgttctc                >  2:551187/1‑140 (MQ=255)                                                                                                                             ataaggGGTTTATGCCGCACCGGCGGTGAAGCCCATGCCTAAATCATATGTTGTGGTAAGGCCGCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTAc              <  2:720580/141‑1 (MQ=255)                                                                                                                              gaagaGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTAcc             >  2:61132/1‑143 (MQ=255)                                                                                                                                     tgcacgCCGCACCAGCGCTAAAGCCCATGCCTAAATCCTATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACTTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTACCTTGATAc      <  1:518344/138‑1 (MQ=255)                                                                                                                                      gtATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTACCTTGATACt     <  1:48578/143‑1 (MQ=255)                                                                                                                                       tATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTACCTTGATACTg    <  2:30635/143‑1 (MQ=255)                                                                                                                                         tGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTGCGTTGTCGGCGATAGCCGGACCATTACTGGCTCCTTCGTCGTTCCCGTGCTACCGCa  >  2:1035386/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                              ACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGTTACCTTGATACTGCA  >  NC_000913/1436108‑1436385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.