Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)98 (1.890) 65/282 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)61 (1.180) 45/282 0.1 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 150 total aligned reads displayed.

AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631
                                                                                                                                              |                                                                                                                                              
ggatgacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                >  2:488104‑M1/140‑143 (MQ=255)
ggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                <  1:140662‑M1/4‑1 (MQ=255)
ggataacgcctccaatggccaagaaacggtctaaataggttgattcaaggcatttacgggagaaaaaatctgctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                >  2:575496‑M1/140‑143 (MQ=255)
aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                                >  2:605289/1‑143 (MQ=255)
 gataacgctttaaatggcgaagaatcggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                               >  1:685174‑M1/139‑143 (MQ=255)
  ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagcctggaagaatttccccgcttattcgcaccttccctaagt                                                                                                                                              >  2:935005‑M1/138‑141 (MQ=255)
  ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                              >  2:247367‑M1/138‑143 (MQ=255)
  ataacgcctgaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctaagt                                                                                                                                              >  2:703301‑M1/138‑141 (MQ=255)
  aaTGAAACAGGAATAATCGAAATGGAATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATAACTTTCATGCAATACAAGATAAGCTCTTTTTAAACACACACGTAGCGCACAAACAACTAAgt                                                                                                                                              >  2:566164‑M1/1‑141 (MQ=255)
     acgccgtaaatggcgaagaagcggtgtaaataggctgaaaagaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                           >  1:398938‑M1/135‑143 (MQ=255)
      cgccttaaatggctaagatacggtataaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagctgataagaatttccccgcttattcgcaccttccCTAATTAAAt                                                                                                                                          >  2:229438‑M1/134‑143 (MQ=255)
         cttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaactgaaatgactgagtcagccgagaggaatttccccgcctattcgcaccttcgCTCATTACATacc                                                                                                                                       <  1:344433‑M1/13‑2 (MQ=255)
          ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccctaagtaagatggg                                                                                                                                      <  1:743965‑M1/14‑7 (MQ=255)
            gAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                    <  1:387373‑M1/143‑13 (MQ=255)
            gAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                    >  2:904335‑M1/1‑131 (MQ=255)
               tggcgaagaaactgtctaaataggctgattcaaggcatttacgggagcacatatcggctcaaacataaagaaatgaaataactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAtaccaagcaa                                                                                                                                 <  2:326866‑M1/19‑4 (MQ=255)
                  tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtc                                                                                                                              >  1:613596‑M1/1‑125 (MQ=255)
                    aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                            >  2:694928‑M1/120‑143 (MQ=255)
                      gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttacccgcttattcccaccttccCTAATTAAATCCAAACACAAGcaaca                                                                                                                          <  2:886273‑M1/26‑1 (MQ=255)
                       aaacggtcgagataggctgattcaaggcatttacgggagaaaaaatcggctcacacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                         >  1:525279‑M1/117‑143 (MQ=255)
                       aTGTGATGTTGCGAACAGTCAAAATAACTTACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGTAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctga                                                                                                                         <  2:4971‑M1/143‑24 (MQ=255)
                           ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctgaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTATTGAATACTAAGGAAGGCAACAATCaa                                                                                                                     <  1:913612‑M1/31‑1 (MQ=255)
                               ttGCGCACAGTCAAAATAACTCACCGTAAATAATCAGCTGCTGTAAATAGTCGCTTGCATGCATTACCAGATAAGCTATTTTTAAACAGACACGTACCGCACAACAAACGAAggaaggtgcgaacaagtccctgatatgagat                                                                                                                 >  1:468335‑M1/1‑112 (MQ=255)
                               taaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACtta                                                                                                                 <  1:277816‑M1/35‑1 (MQ=255)
                                 aataggctgattcaaggcatttacgggagaaaaaatgggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                               <  1:620174‑M1/37‑1 (MQ=255)
                                   taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                                                                                                             <  2:893310‑M1/39‑1 (MQ=255)
                                    aggctgattcaaggcatttactggagaaaaaatcgtctcaaacacgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtt                                                                                                            >  2:743116‑M1/104‑143 (MQ=255)
                                      gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatatccacgcttatccgcaccttccTTAATGAAATACAAAGAAAGGCCACCATCaacttactgtaaa                                                                                                          <  2:823695‑M1/42‑4 (MQ=255)
                                      gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgaatgagtcaggcgcgaagaaatgccccgcttattcgcaccttccCTAATTAAATAAAAAGAAAGGCAACAATCAAAttaatgttaa                                                                                                          <  1:952103‑M1/42‑1 (MQ=255)
                                      gctgattcaaggaatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                          >  2:942029‑M1/102‑143 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  1:223203‑M1/143‑39 (MQ=255)
                                      caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                          <  1:118534‑M1/143‑39 (MQ=255)
                                       ctgattcaaggcatttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                         >  1:301440‑M1/101‑143 (MQ=255)
                                        tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaatg                                                                                                        <  1:588444‑M1/44‑1 (MQ=255)
                                        tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaatg                                                                                                        <  1:457956‑M1/44‑1 (MQ=255)
                                         tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcaggtttgtc                                                                                                       >  1:764535‑M1/1‑102 (MQ=255)
                                          attcaatgcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAGACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                      >  1:895398‑M1/98‑143 (MQ=255)
                                             aaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                                                                                   <  2:545738‑M1/143‑46 (MQ=255)
                                              aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                  <  2:422918‑M1/50‑1 (MQ=255)
                                              aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                  <  1:628991‑M1/50‑1 (MQ=255)
                                              aTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAACAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcgctgataagagaccatgtttgtcatctg                                                                                                  >  2:315447‑M1/1‑97 (MQ=255)
                                               aggcatttacgggagaaaaaatcggctcaaacacgaagaaatgaaatgactgagtaagccgagaagaatttcaccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCCACTTACTGTTAATGAAatggt                                                                                                 <  1:402140‑M1/51‑3 (MQ=255)
                                                  catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                              >  1:341994‑M1/90‑143 (MQ=255)
                                                  catttacgggagaaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                              >  1:177262‑M1/90‑143 (MQ=255)
                                                    tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                            <  1:782044‑M1/56‑1 (MQ=255)
                                                     ttacgggagaaaaaaccggcgccagcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                           >  1:79227‑M1/87‑143 (MQ=255)
                                                     aCCGTAAATAATCATCTCCTTTAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                                                                           <  2:347068‑M1/143‑54 (MQ=255)
                                                         tAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcctctggagccatagac                                                                                       >  2:813525‑M1/1‑86 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatatat                                                                                       <  1:677240‑M1/61‑1 (MQ=255)
                                                         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTGTAcatatag                                                                                       <  2:190570‑M1/61‑2 (MQ=255)
                                                          ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCACCTTAATGTTAATGAAATGTTTTACATATAtt                                                                                      <  1:894329‑M1/62‑1 (MQ=255)
                                                          aaaTAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtatgtcatctggagcaatagaac                                                                                      >  2:621736‑M1/1‑85 (MQ=255)
                                                            agaaaaaatcggctcaaacatgaagaaataaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGACAACAAGCAACTTAATGTTACTGAGATGTTTTACACAtaataa                                                                                    <  2:782725‑M1/64‑1 (MQ=255)
                                                             gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                   >  2:750766‑M1/79‑143 (MQ=255)
                                                              aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGCCACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatcgcacaaat                                                                                  >  1:26066‑M1/1‑81 (MQ=255)
                                                              aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAcc                                                                                  <  2:395312‑M1/66‑1 (MQ=255)
                                                                 catcTGCTATAACTAATCACTTTCGTGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacgagtccctgatatgagatcatgtttgtcatctggagtcatagaacagggttc                                                                               <  2:806927‑M1/143‑66 (MQ=255)
                                                                  actcggctcaaccatgtagaacggaaatcactgagtcagccgagaagaatttcccagcttattcgcacattccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                              >  2:360366‑M1/74‑143 (MQ=255)
                                                                  aatcggctcaaacatgaagatatgaaatgacttagtcagccgagaagaatttccccgcttattcgcaccttccCAAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                              >  1:240065‑M1/74‑143 (MQ=255)
                                                                        tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACAGCACAACAAACTAAgtaaggtgcgaacaagtccctgatatgagatcatgcttgccatctggagccatagaacagggtcaaccatga                                                                        >  2:630434‑M1/1‑71 (MQ=255)
                                                                            aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                    >  1:189383‑M1/64‑143 (MQ=255)
                                                                            aacatgaagaaatgaaatgactgagtcagccgagaagaatgtccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                    >  1:317914‑M1/64‑143 (MQ=255)
                                                                                  cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                              <  1:142883‑M1/143‑83 (MQ=255)
                                                                                  cACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                              >  1:407394‑M1/1‑61 (MQ=255)
                                                                                   agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                             >  1:722535‑M1/57‑143 (MQ=255)
                                                                                   agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                             >  2:782044‑M1/57‑143 (MQ=255)
                                                                                   aCTATCATGCAATACCAGATAAGCTATTTTTAAACAGACACGTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt                                                             <  1:659545‑M1/143‑84 (MQ=255)
                                                                                    gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCa                                                            >  2:747933‑M1/56‑143 (MQ=255)
                                                                                       atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                         <  2:22779‑M1/91‑1 (MQ=255)
                                                                                               tACCATATAAGCTATTTTTAAACTGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac                                                 <  2:35618‑M1/143‑96 (MQ=255)
                                                                                               actgagccagccgagaagaatttccccgcttattcgcaccttccCTCATTAAATACAAAGACAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGATTAATGCGGAGaatcactacactactt                                                 <  2:166325‑M1/99‑4 (MQ=255)
                                                                                                 tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                               <  1:738934‑M1/101‑1 (MQ=255)
                                                                                                   agtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCtt                                             <  1:876089‑M1/103‑1 (MQ=255)
                                                                                                       agccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTCTTTAATGCGGAGAATCAGTACACTATTTTCTTATaa                                         <  2:932906‑M1/107‑1 (MQ=255)
                                                                                                         ccgagaagaatttccccgcttattcacaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTACTGTTAATGAAATGTTTCACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCCTATAAtt                                       <  2:246376‑M1/109‑1 (MQ=255)
                                                                                                          cgagaagaatttccccgcttattcgcaccttacCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTa                                      >  2:303130‑M1/34‑143 (MQ=255)
                                                                                                          cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgctcacagtgaattcag                                      >  2:738496‑M1/1‑37 (MQ=255)
                                                                                                            agaagaatttccccgcttattcgcaccttccCTAATAAAATACAAAGAAAGGCAACAATCAACTTCATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACa                                    <  2:682927‑M1/112‑1 (MQ=255)
                                                                                                            aTTGTTAAACAGACTCTTACCGCAGATCAAACTAAggaaggtgcgaacaagtccctgatatgtgatcatgtgtgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                    <  2:153339‑M1/143‑109 (MQ=255)
                                                                                                              ttttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcccacagtgaattcagcact                                  >  1:921507‑M1/1‑33 (MQ=255)
                                                                                                                ttAAACAGACACTTGCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                                <  2:352456‑M1/143‑113 (MQ=255)
                                                                                                                gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                                <  1:433211‑M1/116‑1 (MQ=255)
                                                                                                                  atttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTAATTTCTTATAATTACATTTGaa                              <  2:44826‑M1/118‑1 (MQ=255)
                                                                                                                   tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                             <  1:770251‑M1/119‑1 (MQ=255)
                                                                                                                     tccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAtt                           <  2:298944‑M1/121‑1 (MQ=255)
                                                                                                                     tccccgcttattcgcaccgtccCTAATTAAATACAAAGAAAAGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAtt                           >  2:108157‑M1/23‑143 (MQ=255)
                                                                                                                      aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg                          >  1:556460‑M1/1‑25 (MQ=255)
                                                                                                                       gcaatatacctcaCAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                         <  2:818399‑M1/137‑120 (MQ=255)
                                                                                                                        ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTAcatttgaactgata                        <  1:424793‑M1/124‑7 (MQ=255)
                                                                                                                        ccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGATTAACATATACAAACCACTTTTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATAACATTTGAAATtata                        <  2:333876‑M1/124‑1 (MQ=255)
                                                                                                                        acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc                        <  1:875700‑M1/143‑121 (MQ=255)
                                                                                                                          gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                      <  2:547100‑M1/126‑1 (MQ=255)
                                                                                                                                 cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTAAATGATCACCg               <  2:564118‑M1/133‑1 (MQ=255)
                                                                                                                                  cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaccgtgaattcagcagtaagcgccgtcagacccgcaa              >  2:361764‑M1/1‑13 (MQ=255)
                                                                                                                                  cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa              >  1:207614‑M1/1‑13 (MQ=255)
                                                                                                                                  cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa              <  2:407394‑M1/143‑131 (MQ=255)
                                                                                                                                   catacagactAAggaagctacgaacaagcccctgatatgagatcatgttcgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa             <  2:696118‑M1/140‑132 (MQ=255)
                                                                                                                                     aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga           >  1:241311‑M1/1‑10 (MQ=255)
                                                                                                                                          aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                     >  1:121947‑M1/1‑5 (MQ=255)
                                                                                                                                          aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                     <  2:121947‑M1/128‑124 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATT  >  NC_000913/1979347‑1979631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.