| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 52 [1] | [1] 52 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 1 (0.020) | 49 (1.000) | 40/266 | 0.2 | 99.1% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258545‑258824 | taaaaatttgctaaattttgccaatttggtaaaacaattgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggaccgcatatacgtaaaggaaAGTg > 2:659391‑M2/140‑143 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:617355‑M2/139‑143 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatatccgtcaaggtgAGTGc > 1:228619‑M2/139‑143 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttacagagtggacacccgaagagcagattgatcaaaaaatttaccgcacaaggcccggatatgcgtgcagctcAGTGc > 2:473566‑M2/139‑143 (MQ=255) aaaaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgataccgagtggacacccgaagagcagattgatcaaaaaatgtaccgcagtaggcccgtatagtcgagaagggaAGTGc > 1:789344‑M2/139‑143 (MQ=255) aaatttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggccacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa > 1:204308‑M2/137‑143 (MQ=255) ctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt > 2:715757‑M2/130‑143 (MQ=255) aaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg > 2:422877‑M2/128‑143 (MQ=255) attttgccaatttggtaaaacagttgcatcccaacaggagatagcaatgacgttaccgagtaaaaacaagaagagaagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt > 1:87700‑M2/126‑143 (MQ=255) ttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgaaaattcgtgaaggtaAGTGCAAAGATAATCGATTCt > 2:744384‑M2/123‑143 (MQ=255) caagttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:363402‑M2/25‑1 (MQ=255) aatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagagtgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:171603‑M2/118‑143 (MQ=255) taaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc > 1:741987‑M2/111‑143 (MQ=255) gtttcatcaccacagtagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt < 1:715279‑M2/40‑1 (MQ=255) ttggatcacaacaggggatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa < 2:933084‑M2/41‑1 (MQ=255) gcatcacatgaggaggtcgctgtggcgttaccgagtggacacccgaagagcagattgagcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg < 2:699336‑M2/43‑1 (MQ=255) catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc > 2:33087‑M2/100‑143 (MQ=255) catcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatatacgagaaggtaAGTGCAAAGATAATCGATTCTTTTTCGCTTGTCTGGCTGTATGc > 2:33001‑M2/100‑143 (MQ=255) aacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAc < 2:87700‑M2/50‑1 (MQ=255) gatggtatagcaatgacgtgaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGt < 2:168680‑M2/52‑1 (MQ=255) gtggttagcaattacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa < 2:415108‑M2/54‑1 (MQ=255) ggagatagcaatgacgttaccgagtggacagtgggagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa < 2:419787‑M2/54‑1 (MQ=255) tagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCg < 1:715757‑M2/59‑1 (MQ=255) aatgacgttaccgagtgaacacccgaagagcagaatgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCAc > 2:206189‑M2/81‑143 (MQ=255) atgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACATGAAACCGGCAcc > 1:316282‑M2/80‑143 (MQ=255) ccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGAGACAACGTGAAACCGGCACGg‑‑gaagcggg > 2:839955‑M2/71‑139 (MQ=255) cgagtggacacccgaagagcagattgatcaacaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGt < 1:39042‑M2/74‑1 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGt < 1:883498‑M2/74‑1 (MQ=255) cgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGt > 1:733155‑M2/70‑143 (MQ=255) agtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCACAGATCCGCGATGCTTTTTCGGTTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAGGTGCGtgc > 1:130779‑M2/68‑142 (MQ=255) gacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAAGCGGCAACG‑‑GAAGTGAGTGAAATc > 2:34126‑M2/64‑143 (MQ=255) cacccgaagagcagattgatcaaaaaatttaccgcactaggcgcgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACAGGcaccg‑‑gacgtgcgtgcgatctg > 2:652733‑M2/62‑136 (MQ=255) cacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTg < 2:617355‑M2/82‑1 (MQ=255) caccagaagggcagattgatgaaaaaattttccgcactagtcccgtatattcgtgaaggtaAGTGCAAAGTTAATCGATGCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTg < 2:947975‑M2/82‑1 (MQ=255) acccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTgg < 1:422877‑M2/83‑1 (MQ=255) acccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTgg > 1:788653‑M2/61‑143 (MQ=255) ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAAGTGAAACCGGAACCG‑‑ACAGGCCGTGAATTCTgggg > 1:847513‑M2/59‑143 (MQ=255) cgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGCATGCGTAAACGTGAGACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGc > 1:128466‑M2/58‑143 (MQ=255) cagattgatcaaaaaatttaccgcactaggcccttatatgcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGtgga < 1:256352‑M2/93‑1 (MQ=255) cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAGCGTGAAGCCGGCACCG‑‑GAAGTGCGTGAGTTCTGGGGCGGGtgga > 2:143130‑M2/51‑143 (MQ=255) cagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGtgga > 2:494914‑M2/51‑143 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGa > 1:470518‑M2/41‑143 (MQ=255) aatttaccgcactaggcccgtatatgcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAcgcg > 2:939887‑M2/37‑143 (MQ=255) tttgccgcactgggcgcggatattcgttaaggtaAGTGCAAAGATAATCGAGTCTTTTTCGATTGTCTGGCTGTATGCGGCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCa < 2:553866‑M2/109‑1 (MQ=255) ttaccgtgctatgcccgtatcttcgtgaaggtaATTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGTTGTATGTGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTTGGGCTGGTGGATT‑GAGCTGGAAGCGCAg < 2:417597‑M2/110‑1 (MQ=255) ttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTGTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCAg < 2:677051‑M2/110‑1 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCAGGAATccc < 2:204308‑M2/117‑1 (MQ=255) taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACAGGCACAG‑‑GAAGTGCGTGAATTCTGGGGCGGGTGGATG‑GAGCTGGAAGCACAGGACTCCCGt > 2:631592‑M2/25‑143 (MQ=255) tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGtt < 2:345564‑M2/132‑1 (MQ=255) tgaagggaAGTGCAAAGATAATCGATTCCTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTCAGTGAATTCTTGGGCTGGTGGATG‑GAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAcc < 1:136208‑M2/135‑1 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 1:926387‑M2/141‑1 (MQ=255) tAAGTGCAAAGATAATCGATTCTTTTTTGATTGTATGGTTGTTTTGGTCAACGTGAACCCGGTGTCGTCGAAG‑CAGAGAGTCCGGGGACTG‑‑AGATGCTTTCGGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTg < 1:953307/143‑1 (MQ=255) | CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCG‑‑GAAGTGCGTGAATTCTGGGGCTGGTGGATG‑GAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTG > NC_000913/258545‑258824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |