New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2791004 =55 (1.060)5 (0.100) 5/270 6.6 8.5% coding (1023/1269 nt) lhgO L‑2‑hydroxyglutarate oxidase
?NC_000913 2791022 = 55 (1.110)coding (1041/1269 nt) lhgO L‑2‑hydroxyglutarate oxidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGCTGCAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAGGTACA  >  NC_000913/2790882‑2791162
                                                                                                                                            |                                                                                                                                            
gTGCTGCAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTCTCTGCGGCTGGTGCCAAAGTATTGTCCACGGCTTTCGTTAAGCGATCTCCAGCCCTGGCACGCCGGAGTGCGCGCGCa                                                                                                                                            >  1:164836/1‑143 (MQ=255)
gTGCTGCAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCa                                                                                                                                            <  1:549269/143‑1 (MQ=255)
    tgcAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAGAAGTATTGTCCCCGGCTGCAGTTATGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCg                                                                                                                                        >  1:652364/1‑143 (MQ=255)
    tgcAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCTCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCg                                                                                                                                        >  1:941599/1‑143 (MQ=255)
     gcgagaCCATCTGCGCTCAGGGCTGGGCGTGATGAAAAACGCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCgg                                                                                                                                       <  2:562379/138‑1 (MQ=255)
     gcAAAACCATCTACGCTCAGGCCTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCgg                                                                                                                                       <  2:139967/143‑1 (MQ=255)
      gacacccATCTACGTTCGGGACTGGGCGAGATGAAAAACGCGCGGTGCAAAAGGGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTGTCGTTAAGCGATGTCAACCCGTGTGGCTCGGGTGTGCGGGCGCAGGCGGt                                                                                                                                      <  2:117485/138‑1 (MQ=255)
        aaaCCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTAt                                                                                                                                    >  1:749143/1‑143 (MQ=255)
                tACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGAc                                                                                                                            <  1:404296/143‑1 (MQ=255)
                    cTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCa                                                                                                                        >  2:339981/1‑143 (MQ=255)
                           cTGTGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGAt                                                                                                                 <  1:528296/143‑1 (MQ=255)
                             gggCGAGATGTAAAACTCGCTGTGCAATAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTGAAGCGCTGTCCAGCGCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGAttc                                                                                                               <  2:587310/143‑2 (MQ=255)
                              tgCGTGATGGAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCTGCTTTCGTTCAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGa                                                                                                              <  2:728772/142‑1 (MQ=255)
                              tgCGAGATGAGGACCTCGCTGGGCAAAGGCGGGTGTCTGCGGCTGGTGCAGAAGGATTGGCCCCGGCCTGCGTTACGCGCTCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGa                                                                                                              <  1:198779/142‑1 (MQ=255)
                              ggCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGa                                                                                                              <  1:402490/143‑1 (MQ=255)
                              ggCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGa                                                                                                              <  2:749143/143‑1 (MQ=255)
                                cGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACg                                                                                                            <  2:124949/143‑1 (MQ=255)
                                   gagcaaaaaCTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGAtt                                                                                                         <  1:169250/139‑1 (MQ=255)
                                      gAAAACCTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTc                                                                                                      <  1:296908/143‑1 (MQ=255)
                                      gAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTACGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCGGATGGACGATTTTc                                                                                                      >  2:331357/1‑143 (MQ=255)
                                      gAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCCGGCGGTATCGCCGGACGGCCGGCTGCGTGACGGTTTTc                                                                                                      >  2:438179/1‑143 (MQ=255)
                                       aaaatCTCGCGGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGAATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCt                                                                                                     <  1:770865/143‑1 (MQ=255)
                                        aaaaCTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCGGGCGGTATCGCCGGACGGCAAGCTGGTTGACGATGTTCTg                                                                                                    >  1:575346/1‑143 (MQ=255)
                                        aaaaCGCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTg                                                                                                    <  1:921848/143‑1 (MQ=255)
                                               gCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATCGTACCAGGCTTGCTTTGCGCGATCTCCGGCTCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTca                                                                                             <  1:178322/143‑1 (MQ=255)
                                                   tgCAAATGCGGCTGTCTGGGGCTGGTGCAAAAGTATTGTCCCCGTCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTcaccac                                                                                         <  2:565745/143‑1 (MQ=255)
                                                   tgCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTcaccac                                                                                         <  1:429953/143‑1 (MQ=255)
                                                     cAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGAAGCTTTTCTGTTTGTAAcccccc                                                                                       >  2:54382/1‑143 (MQ=255)
                                                      aaaaGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCGCCAcccc                                                                                      >  1:142357/1‑143 (MQ=255)
                                                      aaaaGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCAcccc                                                                                      <  1:339981/143‑1 (MQ=255)
                                                                  cTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGCTCca                                                                          >  2:844322/1‑143 (MQ=255)
                                                                   tGCGGCTGGTGCAAAAGTATCGTCCCGCGCTTTGTTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCGGGCTGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCcac                                                                         <  2:151723/143‑1 (MQ=255)
                                                                   ggCGGCTGGGGCAAAAGTGTTGGCCCCGGGTTTCGTTAAGCGACCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCcac                                                                         <  2:546115/142‑1 (MQ=255)
                                                                            tGCAACAGTATTCCCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAAt                                                                <  1:377444/143‑1 (MQ=255)
                                                                            tGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAAt                                                                >  2:262891/1‑143 (MQ=255)
                                                                            tGCAAAAGTATTGTCCCCGGCTGTCGTTAAGCGAGCTCCAGCCCTGGACGGACTCATTCCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAAt                                                                <  1:947993/143‑1 (MQ=255)
                                                                              cAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCCCGACCCCCACCTGCAATgc                                                              >  2:801668/1‑143 (MQ=255)
                                                                              cAAAAGCATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACAGCAAGCTGATTGACGATTTTATGTTTGTCACCACCCCGCGCACGATCCACACCTGCaagga                                                              >  1:109819/1‑140 (MQ=255)
                                                                                agaggaTTGGCCGCGTCTTGCGTTAGGCGATCTCCAGCCCGGGCGCGCCGGGGTGCGGGCGCTGGCGGTATCGCGGGGCGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGAGCCACACCTGCAATgcgc                                                            <  2:189803/138‑1 (MQ=255)
                                                                                     aTTGTGCCCTGCTTTCGTTAAGCGTTCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGTGGTATCGCCTGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTcc                                                       <  2:462118/143‑1 (MQ=255)
                                                                                       tggccccGGCTTTCGTTCAGCTATCTCTATCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTcccc                                                     <  1:805215/140‑1 (MQ=255)
                                                                                       tGTCTCCGGTGTTCTTTAAGCTATCTGCTGTCCGGGCTCGTCTTGGTGTGGGCGCAGGCAGTATCGCCTGACGGCACGCTGATTGTCTATTTTTTGTTTGTTACGACCACGCGCGAGATCTACACCTGCAATGCGCCCTcccc                                                     <  2:864516/143‑1 (MQ=255)
                                                                                           cccGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCa                                                 >  1:732009/1‑143 (MQ=255)
                                                                                            ccGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAg                                                >  2:138172/1‑143 (MQ=255)
                                                                                            ccGGCTTTCGTTAAGCGATCTCCAGCCCTGCCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGGTGGTTTCCCCACCGCCCCCACCCCGCGCACGATCCACACCCGCAATCCGCCCTCCCCGGCac                                                >  1:217975/1‑142 (MQ=255)
                                                                                             cGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGc                                               >  1:394964/1‑143 (MQ=255)
                                                                                                           cGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCCATGCCCCCTCCCCGGCAGCGACCTCAGCGATTc                                 >  1:617125/1‑143 (MQ=255)
                                                                                                              cctcgcgCCCCGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGCCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTa                              <  2:913917/137‑1 (MQ=255)
                                                                                                               ctcCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGTCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTAt                             <  1:103707/143‑1 (MQ=255)
                                                                                                                               ccgGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTc             >  1:608227/1‑143 (MQ=255)
                                                                                                                               ccgGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTc             <  2:394964/143‑1 (MQ=255)
                                                                                                                                cgGTGTGCGGGCGCAGGTTGTATCGCCGGACGGCAAGTTGATTGACGATTTTCTGTTGGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCa            <  1:270869/143‑1 (MQ=255)
                                                                                                                                   gcgacgcgcgcAGCCTGTACCGCCGGACGGCACGCTGCTTGACGATTTTCTGCTTGTCACCACCCCGCGCACGATCCACACATGCCATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCa         <  2:194926/136‑1 (MQ=255)
                                                                                                                                    gtgCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGGTTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCACCCCGGCGGCGACATCAGCAATTCCTAGTGGCGCGCATCTCGTCAGCaa        >  1:539877/1‑143 (MQ=255)
                                                                                                                                     tgCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAg       <  1:477030/143‑1 (MQ=255)
                                                                                                                                     tgCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAg       <  1:831825/143‑1 (MQ=255)
                                                                                                                                       cGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACACCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCACCGACATCACCAATGCACATAGGGACGCACATTGTCAGCAAgga     >  2:504622/1‑142 (MQ=255)
                                                                                                                                          gcgcAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAGGTACa  >  2:31553/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GTGCTGCAAAACCATCTACGCTCAGGACTGGGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAGGTACA  >  NC_000913/2790882‑2791162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.