New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 313275	46 (1.170)	3 (0.080)	3/272	5.7	6.5%	intergenic (‑33/+441)	ykgR/ykgP	uncharacterized protein/pseudogene, oxidoreductase family
	?	NC_000913	= 313278	42 (1.120)					intergenic (‑36/+438)	ykgR/ykgP	uncharacterized protein/pseudogene, oxidoreductase family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCGTTATTAATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGA  >  NC_000913/313134‑313415                                                                                                                                               |                                                                                                                                             tCCGTTATTAATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTc                                                                                                                                             <  1:267167/143‑1 (MQ=255)   ccttattaAGAGAACGGGAGACATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTTCTGTACGTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGt                                                                                                                                           <  1:205405/141‑1 (MQ=255)   cGTTATTAATAGAAATGGCGAAACAACTAGGCGTATTCTACAACTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTTCTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGt                                                                                                                                           <  1:202797/143‑1 (MQ=255)     ttattaATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTaa                                                                                                                                         <  2:445889/143‑1 (MQ=255)        ttaATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTg                                                                                                                                      >  1:208587/1‑143 (MQ=255)               aaaTGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTtat                                                                                                                               >  2:149732/1‑143 (MQ=255)                  tGGAGTATTAAATATGCGTATTTTACAATTGCGACTAATACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTGTATTCTCCTATCATTGTTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTtatat                                                                                                                             <  2:700287/143‑1 (MQ=255)                   ggAGAAATAAATAGGCGTATTCTACCATTAAGACAGAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATataa                                                                                                                           >  1:682443/1‑143 (MQ=255)                    gagaAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATataaa                                                                                                                          <  1:137256/143‑1 (MQ=255)                               aGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTAGTTTTTTCT‑CGTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTg                                                                                                               >  1:450151/1‑143 (MQ=255)                                 gCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGt                                                                                                             >  2:35681/1‑143 (MQ=255)                                     aTTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAAc                                                                                                         <  1:432178/143‑1 (MQ=255)                                            aaTTGCGACAAAAACAACGATATTAATCAGTTTATGGCTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAAtttt                                                                                                  >  1:399400/1‑143 (MQ=255)                                               tGCGACAAAAACAACGATATTAATCAGTTTATGACTGATCTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTg                                                                                               <  2:282735/143‑1 (MQ=255)                                                gctgcAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAGCGAGTTTGGTCAACCAATTTTTTGa                                                                                              <  2:704897/139‑1 (MQ=255)                                                gCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGGTTGGTCAACCAATTTTTTgg                                                                                              >  1:273317/1‑142 (MQ=255)                                                 cGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGAc                                                                                             <  1:44844/143‑1 (MQ=255)                                                  gACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACa                                                                                            <  1:149732/143‑1 (MQ=255)                                                   aCAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCCCTTCGTAAGTGCCCTTATATAAATAACGGGGTTGGTCAACCAATTTGTTGAcgt                                                                                           >  2:619370/1‑141 (MQ=255)                                                    cAAAAACAACGATATTAATCAGTTTATGACTGATTTGATCTACTATATTTT‑CAATCCTTCGTACTTCCTCGCTTTCATTAAGAGTGCGCTTCGTTCCACCGTCTATTTAAATAGTGGGTTTGGTCACCTGATTTTTTGTCATg                                                                                          >  2:283260/1‑143 (MQ=255)                                                                tatTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACAAATTTTTTGACATGTATCACAAAttt                                                                              <  2:161859/143‑1 (MQ=255)                                                                gactAAGCAGTTTATGACTGATTTGCTGTACTTTAGTTT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAAttt                                                                              <  2:346343/140‑1 (MQ=255)                                                                  ttAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGa                                                                            <  2:271660/143‑1 (MQ=255)                                                                                     tttGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAAc                                                         <  1:523364/143‑1 (MQ=255)                                                                                     tttGCTGTACTGTATTCT‑CTCGCATTAGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATCTCGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAAc                                                         <  1:526391/143‑1 (MQ=255)                                                                                        gCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATCAAAAACGAGTTTGGTCAACCAAGCTTTTGACATGTAGCACAAATTTGAATAGATGTATTACATCAACTAt                                                      >  1:27031/1‑143 (MQ=255)                                                                                         cTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATc                                                     <  1:184032/143‑1 (MQ=255)                                                                                         cTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATc                                                     <  1:452678/143‑1 (MQ=255)                                                                                          tGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCt                                                    <  2:208587/143‑1 (MQ=255)                                                                                           gTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACGTGTATCACCAATTTGAATAGATGTATTACATCAACTATCtt                                                   >  1:347857/1‑143 (MQ=255)                                                                                            tACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTCCCCTTATATAAATAACGAGTTTGGGCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCttt                                                  >  2:354190/1‑143 (MQ=255)                                                                                               tttATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTAt                                               <  2:148836/143‑1 (MQ=255)                                                                                                     ct‑ctTTCATTGGTACTTCCTCGCTTTAAAACAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAGCCAATTTTTTGACATGTATCACAACTTTGCATAGATGTATTACATCCACTATCTTTTCTTGTAcc                                         >  2:70112/1‑143 (MQ=255)                                                                                                               tGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCAtt                                <  1:537020/143‑1 (MQ=255)                                                                                                                     ttCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGatcta                          >  2:300838/1‑143 (MQ=255)                                                                                                                        cTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTCATTGCACCAACGTCATTGATATATGt                       <  2:682443/143‑1 (MQ=255)                                                                                                                                aaaaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCCACGTCATTGATATATGTCGCTTGaa               >  1:144165/1‑143 (MQ=255)                                                                                                                                aaaaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGaa               <  1:143921/143‑1 (MQ=255)                                                                                                                                aaaaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGaa               <  2:490675/143‑1 (MQ=255)                                                                                                                                  aaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGt             >  2:156169/1‑143 (MQ=255)                                                                                                                                   aaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTc            <  1:541252/143‑1 (MQ=255)                                                                                                                                   aaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGAAATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTc            <  2:705652/143‑1 (MQ=255)                                                                                                                                    aaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTGTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGAGATATGTCGCCTGGAGtta           >  1:29770/1‑141 (MQ=255)                                                                                                                                         tgaaCTGCGTACGGGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTcc      <  2:712919/140‑1 (MQ=255)                                                                                                                                           cACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCgg    >  1:205327/1‑143 (MQ=255)                                                                                                                                             cTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGa  <  2:675498/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             TCCGTTATTAATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGA  >  NC_000913/313134‑313415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.