Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,023,805 (CTTTA)2→1 intergenic (+127/‑159) fliR → / → rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2023796 2023800 5 51 [0] [0] 53 fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2023801 =0 (0.000)47 (1.280) 38/266 0.1 100% intergenic (+123/‑167) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis
?NC_000913 = 2023795 0 (0.000)intergenic (+117/‑173) fliR/rcsA flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis

GAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCG  >  NC_000913/2023661‑2023943
                                                                                                                                            |                                                                                                                                              
ttagtgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcccctatcgcgacattt                                                                                                                                              <  1:324031‑M1/3‑1 (MQ=255)
   gtgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcacttacatatcgcaacaTTTACt                                                                                                                                           <  1:253214‑M1/6‑1 (MQ=255)
    tgaattgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatgctcctgcatcgaaatatttgttttacgctcactcacatatcgcaaaaTTTGCtt                                                                                                                                          <  1:273532‑M1/7‑1 (MQ=255)
    taaattgacattcatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACtt                                                                                                                                          >  2:678298‑M1/137‑143 (MQ=255)
       attgtcattattatcatgctataaggtttatctggttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatagttgttttaagctcactcacatatcgcaacaTTTACTTTaa                                                                                                                                       >  2:614359‑M1/134‑143 (MQ=255)
       attgccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTaa                                                                                                                                       >  1:117750‑M1/134‑143 (MQ=255)
         tgtcattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGa                                                                                                                                     >  2:276083‑M1/132‑143 (MQ=255)
           ccattaatataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgtggcgaaaaatttattttaagctcactcacatatcgcaacaTTTACTTTAAGACa                                                                                                                                   <  1:520830‑M1/14‑1 (MQ=255)
                   ataattccgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgccgcggtatctttcactcaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAgg                                                                                                                           <  1:521000‑M1/22‑1 (MQ=255)
                          cgtaacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATta                                                                                                                    <  1:476448‑M1/29‑1 (MQ=255)
                          cgtaacgtttaccatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATta                                                                                                                    >  2:213929‑M1/115‑143 (MQ=255)
                            taacgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATtata                                                                                                                  >  1:459031‑M1/113‑143 (MQ=255)
                              acgtttatcatgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATaca                                                                                                                <  1:548187‑M1/33‑1 (MQ=255)
                                  ttatcgtgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatctcgcaacaTTAACTTTAAGACAATTCCAGGCAAATaatacaaaac                                                                                                            <  2:129031‑M1/37‑4 (MQ=255)
                                      catgtaatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatctttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTa                                                                                                        <  2:595158‑M1/41‑1 (MQ=255)
                                       atgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTAc                                                                                                       <  2:34623‑M1/42‑1 (MQ=255)
                                        tgttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACg                                                                                                      >  1:234923‑M1/101‑143 (MQ=255)
                                         gttatcctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACgg                                                                                                     >  1:616993‑M1/100‑143 (MQ=255)
                                               ctaaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACACTGCGAGGCAGAGTATACAACACTTTACGGGATAGt                                                                                               <  1:297565‑M1/50‑1 (MQ=255)
                                                taaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTCCTTTAAGACAATTCCCGGCCAATTATACATCCCTTTCCCGTATAgtt                                                                                              <  1:189522‑M1/51‑2 (MQ=255)
                                                 aaggattatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTaa                                                                                             <  1:51257‑M1/52‑1 (MQ=255)
                                                      ttatccgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatataatacccACTACATTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCg                                                                                        <  1:330259‑M1/57‑1 (MQ=255)
                                                           cgaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcacacacatatcgcaacaTTTACTTTAAGACACATCCAGGCAAATTATACAACACTTTACGGGATAGTAAGACCGCATGa                                                                                   <  2:35689‑M1/62‑1 (MQ=255)
                                                            gaaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGCTAGTACGTCCGCCTgac                                                                                  <  1:252464‑M1/63‑2 (MQ=255)
                                                             aaaaattatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaa                                                                                 >  2:298001‑M1/80‑143 (MQ=255)
                                                             aaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGaaa                                                                                 >  2:240576‑M1/80‑143 (MQ=255)
                                                             aaaaataatacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTACAGGCAAATTATACAACACTTTACGAGATAGTGAGTCCGCATGaaa                                                                                 <  2:426368‑M1/64‑1 (MQ=255)
                                                                     tacctacgaacatcttccatgcttctcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga                                                                         >  2:41374‑M1/72‑143 (MQ=255)
                                                                     tacctacgaacatcttccacgatactcctgcagcgaaatatttgttttaagttgactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga                                                                         >  1:406574‑M1/72‑143 (MQ=255)
                                                                     tacctaccaacatcttccagtatacttctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga                                                                         >  2:8610‑M1/72‑143 (MQ=255)
                                                                     gacctacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCga                                                                         >  2:68553‑M1/72‑143 (MQ=255)
                                                                         tacgaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCAGAAAAAACGCGAGAGt                                                                     <  2:629482‑M1/76‑1 (MQ=255)
                                                                            gaacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGgc                                                                  >  2:188143‑M1/65‑143 (MQ=255)
                                                                             aacatcttccaggatactcctgcagcgaaatctttgttttaagctcactcacatatcgcaacaTTTAGTTTACGACAATTCCAGGCAAATTATACAACACTTTCCGGGGTAGTAAGGCCGCCTGAAGAAacgcgagagggggg                                                                 <  1:302571‑M1/80‑6 (MQ=255)
                                                                             aacatcttccaggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTGCATTTAAGACAGTTCCAGGCAAATTATACAACACTTTAGGGGGTAGTAAGTCAGCTTGTAGAATGGCGAGAGTGgcg                                                                 <  1:301936‑M1/80‑1 (MQ=255)
                                                                                 tcggccacgctactcctgctgccaaatatttgtcttgagctcactcacatatcgcaacaTTTACTTTAGTACATTTCCAGGCAAACTATACAAGCCTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCAtt                                                             >  2:647487‑M1/60‑143 (MQ=255)
                                                                                        ggatactcctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGAc                                                      >  1:218845‑M1/53‑143 (MQ=255)
                                                                                                ctgcagcgaaatatttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACACCACTTTACGGGATAGTACGTCCGCCTGAAAAATCGCGAGCGTGGCGCATTAGGCGACCCAggttg                                              <  2:212673‑M1/99‑1 (MQ=255)
                                                                                                      cgaaatatttgttttaagctcacccgcatatcgcaacaTTTACTTTACGACAATTCCAGGCCAATTATACAACACTTTACTGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGt                                        >  2:368211‑M1/39‑143 (MQ=255)
                                                                                                       gaaataattgatttaagctcactcacatatcgcaacaTTTACTGTAAGACAATTCCAGGCAAATTATACAACAATTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAATGGCGCATTAGGTGACCCATGTTGTTCCGtt                                       >  1:47168‑M1/38‑143 (MQ=255)
                                                                                                         aatatttgttttaagttcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACTCTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTa                                     >  2:25052‑M1/36‑143 (MQ=255)
                                                                                                             tttgttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCa                                 <  2:116756‑M1/112‑1 (MQ=255)
                                                                                                                 ttttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCatgat                             <  1:520258‑M1/116‑1 (MQ=255)
                                                                                                                   ttaagctcactcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGCCTAGTtattatgg                           <  1:59220‑M1/118‑2 (MQ=255)
                                                                                                                            ctcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAg                  >  2:189522‑M1/17‑143 (MQ=255)
                                                                                                                            ctcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAg                  >  1:43477‑M1/17‑143 (MQ=255)
                                                                                                                             tcacatatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAGTATGCAgg                 <  2:679722‑M1/128‑1 (MQ=255)
                                                                                                                                 atatcgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAg             <  2:318621‑M1/132‑1 (MQ=255)
                                                                                                                                     cgcaacaTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGGTGTTACGACGAGCCCAGATGAACTAGACAGCTAAGGGGa         <  2:657010‑M1/136‑1 (MQ=255)
                                                                                                                                     cgcaacaCTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGa         >  1:291974‑M1/8‑143 (MQ=255)
                                                                                                                                           aTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATc   >  1:34623‑M1/2‑143 (MQ=255)
                                                                                                                                            TTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTATGGGTTAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCCTTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGCAATCTTCAGATCAGGGGAATTATCg  <  2:320081‑M1/143‑1 (MQ=255)
                                                                                                                                            TTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGGAATATTCAGGTAAGGGGCATTATCg  <  1:526210‑M1/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                              
GAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAATATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCAGGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCG  >  NC_000913/2023661‑2023943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.