| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 38 (0.970) | 33/284 | 0.2 | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 23 (0.590) | 22/284 | 0.9 | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
CTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > NC_000913/2101608‑2101887 | cTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACCTTCTTTAGGAATTTTTGTTTTATTaagg > 1:168525/1‑143 (MQ=255) ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagga > 1:117074/1‑143 (MQ=255) tCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaa < 1:49745/143‑1 (MQ=255) aTCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAAttc < 2:135045/143‑1 (MQ=255) ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATCTTCGTTTTATTAAGGAAGGTG‑CGCATAAGCGGGGAAAtgcttgccgg > 2:621720/1‑138 (MQ=255) cATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGc > 1:413778/1‑143 (MQ=255) acacGCACAAAGTCCGCAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGAATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACt < 2:390150/143‑1 (MQ=255) acacGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACt < 1:68061/143‑1 (MQ=255) acacGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACt > 1:421168/1‑143 (MQ=255) aCCAGCATAAAGGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt < 1:56521/143‑1 (MQ=255) cAGCATACATGATCCTGCGCACCAATCACCAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa < 1:144446/143‑1 (MQ=255) aTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt < 1:455006/143‑1 (MQ=255) gATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTCTTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt > 1:245964/1‑143 (MQ=255) aTCCTGCGCACCGACCATCAGCCTTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt < 2:213230/143‑1 (MQ=21) tCCTGCGCACCCATCAACAACCGTATCAGAATCGATTCTTTCTTTAGGAATTTTTGTTTTATTCCGG‑TGTTGTCTTATAACAGGCACAAGCCCTCTCGGCTGATTCTGCACTTTCAGTTCTTCATGTTTGAGCCGATTTTTtc < 2:508268/143‑1 (MQ=255) gcgcACCAATCAACAACCGGAGCAGAATAGTTACGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc < 2:502844/143‑1 (MQ=255) aCCAATCAACAACCGAATCAGAATAGATACTAACGTTAGGAATTTTTGTAGTATTAAGGAAGGTA‑CGAATAAGCGGGGAACTTCTTCTCGGCTGTCTCGGTCATTTCATTTCTTCATGTTTGAGCAGAATTTATCTaccaaaa > 1:7234/1‑139 (MQ=18) acaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAGGGTG‑AGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg > 1:500670/1‑143 (MQ=255) aacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa > 2:310511/1‑143 (MQ=255) tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc > 1:117596/1‑143 (MQ=255) aaTAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt > 1:602550/1‑143 (MQ=255) aCTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt < 2:130328/143‑1 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt > 1:134793/1‑143 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt > 1:253560/1‑143 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtaa > 1:90910/1‑141 (MQ=255) ttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc > 1:469750/1‑143 (MQ=255) tAGGAATTTTTTTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc < 2:221640/143‑1 (MQ=255) ggAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTATGTCATTTCATTTCTTCATGTTTGAGCCGATTTGTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGCTTGTGCGccc > 2:1196/1‑142 (MQ=14) gAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGGATTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt > 2:49976/1‑143 (MQ=255) aTTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGTATCAGCCTATTTAGACCGTATCTTCTccttct > 2:397043/1‑139 (MQ=255) tttttGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGTCCTTTa > 1:375736/1‑143 (MQ=255) ttttATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCCTTTCATCTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGACTCAGCCTATTTAGCTCGATTCTATGCCATTTAAGGCGt > 1:686458/1‑143 (MQ=11) ttttATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt > 1:603335/1‑143 (MQ=34) attaAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTACGGCGTTATc > 2:588985/1‑143 (MQ=14) ttaAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATGTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGACTCAGCCTATTTAGACCGTTTCTTCTCCATTTCAGGCGTTAtac > 2:489564/1‑141 (MQ=255) | CTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > NC_000913/2101608‑2101887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |