New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 109710130 (0.670)7 (0.170) 5/268 5.4 19.8% intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 = 1097105 NA (NA)intergenic (+276/+460) ycdU/serX putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGC  >  NC_000913/1096981‑1097242
                                                                                                                        |                                                                                                                                             
aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCg                                                                                                                         <  1:689132/143‑1 (MQ=32)
     aaaGCCCGTGCTGTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg                                                                                                                    <  1:290952/143‑1 (MQ=17)
     aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg                                                                                                                    <  2:422937/143‑1 (MQ=32)
     aaaGCCCATCCTTGCGTACGAGCTCTGCTTTAAACATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgg                                                                                                                    <  1:309086/143‑1 (MQ=11)
       aGCCGGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCTCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgggg                                                                                                                  <  2:229034/143‑1 (MQ=12)
            gTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtct                                                                                                             <  1:249490/143‑1 (MQ=32)
                         aGCTCTTCGTGAAATGGGGCGGGCAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtg                                                                                                <  1:791008/143‑1 (MQ=11)
                             cttcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGtgtgtg                                                                                            <  1:239367/143‑1 (MQ=32)
                             cttcttTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCAGCCTGCGGGCAGCCTGCTCCCTGCGGTCACGGTCTGTCGCCCTGGCTGTCACCAGTTGTCCACCCCCGGTCCGGCCTTCTCATCCCCGCCgtgtcgg                                                                                            >  2:377730/1‑140 (MQ=11)
                             ctccttTAAAGATGGCGGTGAGGCGGGGATTGACTCGCTCCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGtgtgtg                                                                                            <  2:482335/140‑1 (MQ=255)
                                cttTAAATAGGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCaa                                                                                         <  1:10656/143‑1 (MQ=17)
                                       tatGGCGTTGAGGGGGCGATGTACGCGCTTCGGTCGCCCTGCGGGCAGCCCGCGCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGa                                                                                  <  2:158142/143‑1 (MQ=11)
                                              gggAGGGGGGGATTGCCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGaaaaaaaa                                                                           <  1:123242/141‑1 (MQ=25)
                                                  gggggggATTGACTCGCTTCGCGCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGccc                                                                       <  2:185756/143‑1 (MQ=21)
                                                     ggggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTa                                                                    <  1:638161/143‑1 (MQ=35)
                                                       ggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACt                                                                  <  1:484663/143‑1 (MQ=35)
                                                          ttGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGCAAAAAAAGCCCGTACTTTc                                                               >  1:357723/1‑143 (MQ=21)
                                                                cgcttcgcgCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCCGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGa                                                         <  1:35555/143‑1 (MQ=25)
                                                                  cttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGc                                                       >  1:177843/1‑143 (MQ=35)
                                                                       ctcgcCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACgca                                                                                 >  1:709464/1‑110 (MQ=37)
                                                                          cccgtGCGGGCAGCCCGCTCACTGCGTCGCCGGTCTGTCCGACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt                                               <  2:5404/139‑1 (MQ=11)
                                                                                cGGGCCGCCCGCCCGCTCCCGTCGCGGTCTGTCCCTCTGGCGCTCGCCAGCTGCCGACCCCCGGTCGGGGCTTCGCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAatat                                         <  2:594466/143‑1 (MQ=11)
                                                                                        ccGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGATCTGCTTTGACTATGGCGGTGa                                 >  1:254343/1‑143 (MQ=255)
                                                                                                 gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                        >  1:557172/1‑143 (MQ=35)
                                                                                                               tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTGAATATGGCGGTGGGGGGGGGGGTGAGtcgcttcgct          >  2:620861/1‑143 (MQ=11)
                                                                                                               tCCAACTGGCTGTCGCCAGTTGTCAACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgc                >  2:163516/1‑137 (MQ=25)
                                                                                                               tCCAACTGGCTGTCGCCAGTTGTCAACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgc                <  1:163516/137‑1 (MQ=21)
                                                                                                                     tGGCTGTCGCCAGTGGTCGACCCCCGGTCGGGGCTCCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCt    >  1:357908/1‑143 (MQ=21)
                                                                                                                       gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGc  <  1:606753/143‑1 (MQ=35)
                                                                                                                        cTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTa                                                            >  1:761153/1‑84 (MQ=39)
                                                                                                                        |                                                                                                                                             
AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGC  >  NC_000913/1096981‑1097242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.