| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,859 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815859 | 3815940 | 82 | 49 [0] | [0] 49 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815858 | 0 (0.000) | 47 (0.870) | 40/262 | 0.3 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913 | 3815941 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
TGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCT > NC_000913/3815722‑3815999 | tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCCGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCctgccc > 2:410376‑M1/1‑137 (MQ=255) gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcctc > 1:632984‑M1/1‑136 (MQ=255) gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc > 1:911721‑M1/1‑136 (MQ=255) ctggctcagCGCAAAGTCAATAAACTGGGCGTGATATGGTTGCATGCCTTCGCTCCTCATCTGACGTGCCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct < 2:1011065‑M1/140‑9 (MQ=255) ttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctg < 2:201795‑M1/143‑10 (MQ=255) tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTAT‑ACAAAGCCAAAATAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcact > 1:610085‑M1/1‑130 (MQ=255) cccaaATTCGATCCACCGGCGCTGTTCTGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCTGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa < 1:491916‑M1/141‑18 (MQ=255) aaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAACAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTCCTGCcgtgcccaccacctcactagt > 1:534538‑M1/1‑122 (MQ=255) ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcctcccctgcacttcaatgatgc > 2:598414‑M1/1‑120 (MQ=255) aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTACAACTCTGTGTTGTAGCTCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc > 1:199352‑M1/1‑117 (MQ=255) aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc > 1:565597‑M1/1‑117 (MQ=255) aCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAACAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccccagcacttgcatgatcggcccgtct > 2:198581‑M1/1‑112 (MQ=255) ggCGCCGATACGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg < 1:939179‑M1/143‑35 (MQ=255) gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc < 2:331466‑M1/143‑38 (MQ=255) atatGGTCTCATGCCTTCGCCTCTCATCTTACGTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca < 2:599220‑M1/143‑42 (MQ=255) tatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcac > 1:590234‑M1/1‑101 (MQ=255) atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact > 1:135694‑M1/1‑100 (MQ=255) ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttaggtcctccctgc > 2:627366‑M1/1‑98 (MQ=255) tCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAGAAAAAAGGCGGCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc < 2:479393‑M1/143‑50 (MQ=255) aTGCCTTCGCTCCTCCGCTTACTTTTCT‑ACAGAAAATAAAAACGCGCCCCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcat < 2:221909‑M1/143‑52 (MQ=255) gCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcacctgcacttcaatgatgcgccagtcttcggccatcaccgcgttcatgt > 2:968131‑M1/1‑90 (MQ=255) atcctcaTCTTACGTTTCTCACA‑ACAAAAAAACGCCGACTCATCAGTCGCCTTAAAAATCAGTTGGCCAGCGCCGCCTCCTGCcgtcccctgcacgtcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctc < 2:40282‑M1/142‑61 (MQ=255) cctcATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtgatcacgacggtaatgtcggggtctg > 1:189703‑M1/1‑81 (MQ=255) cctcATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctg < 2:911721‑M1/143‑63 (MQ=255) ctcATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgc > 1:366153‑M1/1‑80 (MQ=255) ttttCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcggagtct > 1:560882‑M1/1‑70 (MQ=255) tttCT‑ACGCACAAAAAAAAGGCGATGCAGCAGTCGCCTTAAAAATCAGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgaggcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctt < 2:409683‑M1/143‑75 (MQ=255) ttCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc < 1:298500‑M1/143‑76 (MQ=255) aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagggtcttcaacgta > 1:61023‑M1/1‑62 (MQ=255) gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTCCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcctgtcggcctccgcggcagagccttcaacccat > 2:107956‑M1/1‑61 (MQ=255) cAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattc < 1:261553‑M1/143‑85 (MQ=255) tttaaggcGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggactctgcggcagagtcttcaacgtattccaga > 1:1026653‑M1/4‑55 (MQ=255) aaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga < 1:589896‑M1/143‑89 (MQ=255) aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcatcgccttccagat > 2:925062‑M1/1‑54 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgca > 1:833917‑M1/1‑50 (MQ=255) ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcagcactacgttcatgtcgatctctgcgacggagtcttcaacgtagtccatcaggac > 2:745495‑M1/1‑50 (MQ=255) gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaa > 1:984545‑M1/1‑49 (MQ=255) cagcggtcgccTTAAAAATCAGTCTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgct < 2:364290‑M1/138‑101 (MQ=255) atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtagatcactgcggaagagtcttcaacgtattccagaacgcaaaacactt > 1:1029883‑M1/1‑42 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc > 1:1007226‑M1/1‑34 (MQ=255) ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc < 1:302849‑M1/143‑110 (MQ=255) ccTTAAAAATCAGTCTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgtccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc < 2:842069‑M1/143‑110 (MQ=255) ccTTAAAAATCACCTCGCCAGCGCCGCCTTCTGCcctcccctgcacttccatgctgcgcccgtcttcggccctcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttc < 2:923763‑M1/143‑110 (MQ=255) ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcgtcaacgtattccagatcgcacaccgcttcgccgttcac > 1:91366‑M1/1‑32 (MQ=255) aTCAGTTTGCCAGCGCTGCCTTCTGCcgtcacaggcaatacaaggatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcc < 1:469656‑M1/143‑118 (MQ=255) tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttccacgtattccagatcgcaaaccgcttcgccggtcacaattccgacag > 1:112257‑M1/1‑21 (MQ=255) gCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaatcccgccaggaa > 2:78991‑M1/1‑18 (MQ=255) ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatacccaccgtcatgtcggtctctgcggccgagtcttcaacgtactccagatcgcaaaccgcttcggcgttcaccattccgacagcacctgcggccac > 2:652700‑M1/1‑8 (MQ=255) gCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacgattccgacagaaactgcggctaccatccc > 1:617183‑M1/1‑2 (MQ=255) | TGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCT‑ACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCT > NC_000913/3815722‑3815999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |