Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258674 258683 10–776 61 [0] [1] 62 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)56 (1.020) 44/266 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

GTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257765‑258049
                                                                                                                                              |                                                                                                                                              
gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCAGAACAGGAGATAGCAATGACGTTACCGAAGTAACGCCCGACGAGCAGATCGATCAAAAAATTTACCGCAACAGGCACGGACATTCGTTGaggta                                                                                                                                                >  2:639049/1‑143 (MQ=255)
 cgttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                               <  1:655422‑M1/142‑2 (MQ=255)
     aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATAACAACAGGAGATCGCAATGACGTTACCGAGCGGACACCCGAAGAGCAGATTGATCAAAAAATCTACCGCAGTAGGCCCGTATAGTCGCGAAGGCAagtga                                                                                                                                           >  2:627659‑M1/1‑138 (MQ=255)
            tGCTAAAGTTTGCCAATTTGGTAAAACAGTGGCATCACAAGAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagata                                                                                                                                    <  2:111241‑M1/143‑13 (MQ=255)
              cgaagttttgtcaaTTTGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGCCACGCGAAGTGCAGATTGATCAAAAAATTTACCGCACTAGGCGCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                  <  2:826158‑M1/138‑15 (MQ=255)
              cTACATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                  <  2:130385‑M1/143‑15 (MQ=255)
              cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                                  <  1:682584‑M1/143‑15 (MQ=255)
               tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAACTTTACCGCACTAGGCCCGTATATTCCTGACGGAAagtgcacagatgctc                                                                                                                                 >  1:818420‑M1/1‑128 (MQ=255)
                         cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                       >  1:839351‑M1/1‑118 (MQ=255)
                          aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGATGTTACCAAGTGGACACCCGAAGCGCAGATTGATCAAAAAATTTACCGAACTAGACCCGCAGAATCATGAAGGAAagtgcaaagctaaaccattctttttc                                                                                                                      >  2:629305‑M1/1‑117 (MQ=255)
                          aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGATAagtgcaaagataatcgattctttttc                                                                                                                      >  2:406933‑M1/1‑117 (MQ=255)
                           aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     >  1:739353‑M1/1‑116 (MQ=255)
                           aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     <  1:526314‑M1/143‑28 (MQ=255)
                            tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    <  1:439396‑M1/143‑29 (MQ=255)
                                  aaaaCGGGTGCATCACAACAGGAGATAGCAATGACGTTACCCAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                              <  1:30703‑M1/143‑35 (MQ=255)
                                     aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgattctttttccattgtctggc                                                                                                           >  2:644431‑M1/1‑106 (MQ=255)
                                     aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                           >  2:652664‑M1/1‑106 (MQ=255)
                                     aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataaaggattctttgtcgagtgtctggc                                                                                                           >  1:292884‑M1/1‑106 (MQ=255)
                                        gTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                        >  1:388866‑M1/1‑103 (MQ=255)
                                           gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                       <  1:511248‑M1/125‑26 (MQ=255)
                                           gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                       >  2:511248‑M1/1‑100 (MQ=255)
                                                acaacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAACTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                                                                                                >  1:212328‑M1/1‑95 (MQ=255)
                                                acaacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACAGCACTCGGCCCGCATCTTCGTGCAGGTAcgtgcaaagcttatcccttctttttcgatcgtctggctgtatgcgtca                                                                                                >  1:927357‑M1/1‑95 (MQ=255)
                                                         tagggcaatGAGGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                       <  2:691491‑M1/139‑58 (MQ=255)
                                                               aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAcgcgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaaccgacac                                                                                 >  2:578155‑M1/1‑80 (MQ=255)
                                                               aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                 <  1:395918‑M1/143‑64 (MQ=255)
                                                               aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                                  >  2:121485‑M1/1‑80 (MQ=255)
                                                               aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt                                                                                                                  <  1:121485‑M1/110‑31 (MQ=255)
                                                                  gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg                                                                              <  2:825632‑M1/143‑67 (MQ=255)
                                                                    cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                            <  1:1036733‑M1/143‑69 (MQ=255)
                                                                     gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAAGTTACCGCACTAGGCCCGCATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                           <  1:343464‑M1/143‑70 (MQ=255)
                                                                      ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                          <  2:330385‑M1/143‑71 (MQ=255)
                                                                             gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                        <  1:544249‑M1/106‑41 (MQ=255)
                                                                             gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                        >  2:544249‑M1/1‑66 (MQ=255)
                                                                                 acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaactgcgtgaattct                                                               >  2:436405‑M1/1‑62 (MQ=255)
                                                                                     ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaatgtaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaagtctgggg                                                           >  1:152129‑M1/1‑58 (MQ=255)
                                                                                     ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                           >  1:327123‑M1/1‑58 (MQ=255)
                                                                                     ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataagcgattctttttcgattgtctggctgtatgcgtcagcgtgaaaccggcaccggaagtgcgtgaattctgggg                                                           <  1:685277‑M1/143‑86 (MQ=255)
                                                                                      cGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacttgaaaccggcaccggaagtgcgtgaattctggggc                                                          >  1:448957‑M1/1‑57 (MQ=255)
                                                                                         agcgcagATTCAGCAAAAAATTTACCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagatcatcgattctttgtcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgg                                                       <  2:578274‑M1/140‑90 (MQ=255)
                                                                                             cAGATTGATCAAAAAATTTACCGCGCTAGGCCCGTATATTCGTGAAAGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtaaacgtgaaaccggcaccggaagtgcgtggattgtggggctggtgga                                                   >  2:726942‑M1/1‑50 (MQ=255)
                                                                                              atattGATCCAAAAAGTTACCGCGCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgtttctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                                  <  1:395684‑M1/141‑95 (MQ=255)
                                                                                               gcttgaTCAACAAATTTACCGCACGAGTCCCGGGGATTCGTGAAGGTAagtgcaaagatgatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                 <  1:822830‑M1/141‑96 (MQ=255)
                                                                                                aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgcgtgtctggctgtatgcgtaaacgtgaaaccggcaccgggagtgcgtgaagtctggggcaggacgatga                                                >  2:1036933‑M1/1‑47 (MQ=255)
                                                                                                   gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGCAGGTAagtgcaaagataatcgattcattgtgttttgttgggctgtatgcgtccacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagc                                             <  1:894787‑M1/143‑100 (MQ=255)
                                                                                                     tCAAAAAATGTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtcaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                           <  1:44288‑M1/143‑102 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtttgcgtctacgtgaaaccggcacctgaagtgcgtgaattgtgttgctggtggatagagtcgga                                         >  2:583115‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggg                                         >  1:31578‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacaggaagtgcgtgaattctggggcaggtgcatggagctggc                                         >  2:870301‑M1/1‑40 (MQ=255)
                                                                                                       aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgataatttttccaatgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                         >  1:668978‑M1/1‑40 (MQ=255)
                                                                                                        aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                        >  1:677862‑M1/1‑39 (MQ=255)
                                                                                                        aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGCTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                        <  1:75365‑M1/143‑105 (MQ=255)
                                                                                                             tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                   <  1:856688‑M1/143‑110 (MQ=255)
                                                                                                                       tAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                         <  1:963166‑M1/143‑120 (MQ=255)
                                                                                                                           cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                     <  2:560245‑M1/143‑124 (MQ=255)
                                                                                                                            ccGTATATGCGGGAAGGTAagtgcaaagataatcgattctttttcgtttgtctgcgaccacgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                    <  1:488858‑M1/143‑125 (MQ=255)
                                                                                                                             cGTATACGCGTGGAGCTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacc                   <  1:941274‑M1/143‑126 (MQ=255)
                                                                                                                                        gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca        <  2:388866‑M1/143‑137 (MQ=255)
                                                                                                                                           ggTAagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt     <  1:542708‑M1/143‑140 (MQ=255)
                                                                                                                                              aagtgcaaggatgatcgattctttttcgatgttctggctgtattcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggtgctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg  <  2:839351‑M1/143‑143 (MQ=255)
                                                                                                                                              aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg  <  2:902518‑M1/143‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
GTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257765‑258049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: