Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979269	1979278	10–776	71 [0]	[0] 71	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	70 (1.270)	56/266	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978365‑1978643                                                                                                                                          |                                                                                                                                              cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                          >  1:610119‑M1/1‑138 (MQ=255) cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                          <  1:501706‑M1/143‑6 (MQ=255)   ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                        >  1:1004900‑M1/1‑136 (MQ=255)       acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                    >  2:680001‑M1/1‑132 (MQ=255)       acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTCTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                    >  2:973423‑M1/1‑132 (MQ=255)           aTCTAAGACTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCGCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                <  1:147123‑M1/143‑16 (MQ=255)              tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                             >  2:8524‑M1/1‑125 (MQ=255)                   tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  1:553103‑M1/143‑24 (MQ=255)                   ttttgCCGAAACCTACGCAACTGTACTCGCCACTACACGCACATACAACGGAGGGAGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTACCATAAATGtataggtcctactgttgttttgg                                                                                                                        <  2:384783‑M1/143‑24 (MQ=255)                   tctctcctaAGTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  2:247381‑M1/139‑24 (MQ=255)                       tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCAATTACTTAACATAAATGtataagtcctacttttgttttggctgt                                                                                                                    >  1:241323‑M1/1‑116 (MQ=255)                           taggcgacgCGTCTGTACTCGTCACTACACGCGCATACAACGGAGGGGGGCTGCGATTGTCAATAATGGGTGATGGAGATCACACAAAACACTCAATTACTTGACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                <  2:160078‑M1/139‑32 (MQ=255)                             aTCGAGGCAACGGTACTCGTCTCTCCACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca                                                                                                              <  2:556609‑M1/143‑34 (MQ=255)                             aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATACTGCGTGATGCGGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacatttgttttgggtgtatttcc                                                                                                              >  2:15220‑M1/1‑110 (MQ=255)                              tCGACGCAACTGTACTCGTCACAACAAACACATACAACAAAGGGGGCCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                             <  1:946501‑M1/143‑35 (MQ=255)                                 aCGCGACTGGACGCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          <  2:46322‑M1/143‑38 (MQ=255)                                    cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                       <  1:212622‑M1/143‑41 (MQ=255)                                     aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgtgtgtatttcaatctgtta                                                                                                      >  2:1026038‑M1/1‑102 (MQ=255)                                     aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGACCACGCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatgccactcagtta                                                                                                      >  2:394146‑M1/1‑102 (MQ=255)                                         gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:884854‑M1/143‑46 (MQ=255)                                          tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttctgttttgggtgtatttcaatctgttaaaaag                                                                                                 >  2:365420‑M1/1‑97 (MQ=255)                                               gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                            <  1:233308‑M1/143‑52 (MQ=255)                                                  aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                           <  1:941627‑M1/141‑53 (MQ=255)                                                  aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                           >  2:941627‑M1/1‑89 (MQ=255)                                                    tACACGCGCGTTCGACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta                                                                                       <  2:816379‑M1/143‑57 (MQ=255)                                                        cGCACATACCACGGAGGCGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACCAAACACTCAATTACTTAACATAAATGtatacgtcatacttttgttttgggtgtatttccatctgttaaaaagtttttcgctacgct                                                                                   <  1:63338‑M1/143‑61 (MQ=255)                                                           acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                >  2:154163‑M1/1‑80 (MQ=255)                                                            caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                               <  1:766021‑M1/143‑65 (MQ=255)                                                               aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctcgcaagc                                                                            >  2:452782‑M1/1‑76 (MQ=255)                                                               aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                            >  2:452241‑M1/1‑76 (MQ=255)                                                                 aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagccagcaa                                                                          >  1:365776‑M1/1‑74 (MQ=255)                                                                    ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                       <  1:407784‑M1/143‑73 (MQ=255)                                                                    ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtgtttcgctacgctagcaagcaaaaa                                                                       <  2:283921‑M1/143‑73 (MQ=255)                                                                        gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttcaatatgttaaaaactttttatatacactaacaaggaaaaatgaa                                                                   >  2:900132‑M1/1‑67 (MQ=255)                                                                         ggggCTCCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                  <  1:1045608‑M1/143‑78 (MQ=255)                                                                           ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                <  1:285305‑M1/143‑80 (MQ=255)                                                                              tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgatcaaataaaagtgctagctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:1055076‑M1/1‑61 (MQ=255)                                                                                cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatccttttgtttcgggtgtatttccatctgttaaaaagtttttcgctacgctagcaagcaacaaggaaccaggaat                                                           >  1:305097‑M1/1‑59 (MQ=255)                                                                                 gcttttcaATAACGCGTGATGGAGATCACACAAAACACTCAATTACCTAACATCAATGtataagtcatacttttgttttgggtgtacttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                          <  2:369576‑M1/141‑86 (MQ=255)                                                                                 gATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtaccccaatctgttaaaaaatttttctctaccctagcaggcaaaactgcaacaggaata                                                          >  1:1064907‑M1/1‑58 (MQ=255)                                                                                 gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                          >  1:702461‑M1/1‑58 (MQ=255)                                                                                  aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcttgcaagcaaaagagaaacattaataa                                                         >  2:309451‑M1/1‑57 (MQ=255)                                                                                  aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggagtac                                                         >  2:308232‑M1/1‑57 (MQ=255)                                                                                    tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttattttaggtgtacttaaatctgttaaaaagtttttcgctacgctagcaaacaaacatgaaacaggaatacga                                                       >  2:806414‑M1/1‑55 (MQ=255)                                                                                         ataatGCGTGATGCAGATCACACAAAACACTCGATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                  <  2:130389‑M1/143‑94 (MQ=255)                                                                                         ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                  >  1:571056‑M1/1‑50 (MQ=255)                                                                                              gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtgtaagtcatacttttgttttgggtgtatttcaatctgttgaaaagtttttcgctacgctagcaagcaaaaatgaaaccggaataagcgaaatgggat                                             >  2:799818‑M1/1‑45 (MQ=255)                                                                                                gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtattgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaagaaaaaacaaaatgagaagt                                           >  1:1057981‑M1/1‑43 (MQ=255)                                                                                                gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaggcatacttttgttttgggtgtatttaaatctgttaaaaagtttttcgctacgctagcaagcataaatgaagcaggaataatcgaaatgggaggt                                           >  1:319343‑M1/1‑43 (MQ=255)                                                                                                 tGATGCAGATCTCACAAAACGGTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                          <  2:938871‑M1/143‑102 (MQ=255)                                                                                                 tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt                                          <  1:526744‑M1/143‑102 (MQ=255)                                                                                                  gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaaatttttcgctacgctagcaagcaaaaatgaaacagaaataatcgaaatgagatgtag                                         >  2:921843‑M1/1‑41 (MQ=255)                                                                                                    tGCAGATCACACAACACTCTTAATTACTTAATATAAGTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcg                                       <  2:1050465‑M1/143‑105 (MQ=255)                                                                                                     gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgc                                      >  1:948808‑M1/1‑38 (MQ=255)                                                                                                         aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacag                                  >  1:826273‑M1/1‑34 (MQ=255)                                                                                                           cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaagctagccagcaaaaatgaaagaggcataatctaaatgggatgttgcgcacagtc                                >  1:946881‑M1/1‑32 (MQ=255)                                                                                                               caAAACGCTCGATGACCTAACATGAATGtataagtcagacttttgtttggggtgtatatgaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcacaa                            <  2:1049514‑M1/143‑116 (MQ=255)                                                                                                               caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                            >  2:646275‑M1/1‑28 (MQ=255)                                                                                                                aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                           >  2:549386‑M1/1‑27 (MQ=255)                                                                                                                aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                           >  1:623057‑M1/1‑27 (MQ=255)                                                                                                                  aaCACTCGATTACGTAACATAAATGtataagtcatacttttgttgtgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                         <  2:434464‑M1/143‑119 (MQ=255)                                                                                                                        cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                   <  1:203452‑M1/143‑125 (MQ=255)                                                                                                                        cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                   <  1:269152‑M1/143‑125 (MQ=255)                                                                                                                         aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  <  1:8524‑M1/143‑126 (MQ=255)                                                                                                                         aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactaaccg                  >  1:556371‑M1/1‑18 (MQ=255)                                                                                                                            tACTTACCATAAATGtataagtcatacgtttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatcttgcgcacagtcaaaataactcaccgtaa               <  1:462087‑M1/143‑129 (MQ=255)                                                                                                                            tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa               <  1:711267‑M1/143‑129 (MQ=255)                                                                                                                               ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  1:422643‑M1/1‑12 (MQ=255)                                                                                                                                  acatacatGtataagtcatacttttgtttcgggtgtatttcaatctgtgaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc         <  1:42247‑M1/143‑135 (MQ=255)                                                                                                                                  aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc         <  2:1004900‑M1/143‑135 (MQ=255)                                                                                                                                         tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  <  1:365420‑M1/143‑142 (MQ=255)                                                                                                                                          |                                                                                                                                              CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978365‑1978643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑