New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1299667 =NA (NA)5 (0.080) 5/280 8.0 NA noncoding (169/1195 nt) IS5 repeat region
?NC_000913 1299703 = NA (NA)noncoding (205/1195 nt) IS5 repeat region
Rejected: Coverage evenness skew score above cutoff.

ACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1299810‑1299667
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT  >  NC_000913/1299703‑1299844
                                                                                                                                                                                                                                                                                              
gCAGCGCCTCTTCCATCGCGGCCTCGCGCAGGTTGTACCAAGGCGGCATGCAGTGCATGCGTAGCATGGCTTACAGCGGATAAGGTCGCTGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC                                                                                                                                                 <  2:723598/142‑1
atacAGCAGCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC                                                                                                                                                 <  2:422330/139‑1
ACAGAGCATCTTTCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC                                                                                                                                                 <  2:576699/143‑1
ACAGAGCATCTCCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC                                                                                                                                                 <  1:587018/143‑1
 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTCCCAATGCTGCATGCAGTGAATGCGTACCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTGGGGGCAACACGGCTCGACGACTCCCACCATGCTTTGCC                                                                                                                                                >  1:898017/1‑143
 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC                                                                                                                                                >  2:139147/1‑143
 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATCACTTCCACCATGTCTTGCC                                                                                                                                                >  2:1036464/1‑143
 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGATGCATGCAGTGAATGCGTAGCATGGTTTCCATCGGATAAGGTCGCCAGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGGTTGGCC                                                                                                                                                >  2:506568/1‑143
 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATACTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC                                                                                                                                                <  1:974206/143‑1
 CAGAGCATCTTCCATCGCGCCATCGCGCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC                                                                                                                                                <  1:773359/143‑1
 CAGAGCATCTTCCATCGCGCCAGCGCTCAGGTTGTACCAAGGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC                                                                                                                                                <  2:352385/143‑1
  AGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCGGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCC                                                                                                                                               >  1:1044532/1‑143
                                                                                                     GCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGATACAACCTACGCCAGGTCACGATAGAAGA                                            >  2:876146/1‑143
                                                                                                       CTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCCGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATG                                          >  1:826586/1‑143
                                                                                                                                      ccGTTTGGCCGCAAGGCTGGTGATGGCCGGCGACCTTATCCGCTGGAAACCATGCTAGGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTT           <  2:472377/141‑1
                                                                                                                                            TGCCCCAAGGCGGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCG     <  2:399244/143‑1
                                                                                                                                              CCCCCAGGCTGGTAAGGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGT   <  1:290068/143‑1
                                                                                                                                              CCCCAGGGCTGGTAATGGCCGGCGACCTCATATACTGGCAACCATGCGACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGT   <  1:741700/143‑1
                                                                                                                                              CCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCGTGCGTCTGTTTGCTCGGT   >  1:132479/1‑143
                                                                                                                                              CCCCAACGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGCTGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGT   <  2:238250/143‑1
                                                                                                                                              CCCCAACGCGGGCAAGCGCCCGCGACCTTATCCGCTGGAAACCATGCTACGCATTCCCTGCAGGCAGCATGGGTACAACCTGAGCGATGGCGCGATGGAAGGTGCTCTGTACGAAATCGCCCCCATGCGTCTGTTTGCCCGGT   <  2:699394/143‑1
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGCGCGTTGGCGAGATAGCATGTGCTCTGTAGGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT  >  1:405556/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGCTGGAAGATGCGCTGTACCAAATCGCCTCCATGCGCCTGGTTGCCCGGTc  >  2:1015851/1‑142
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTCCGAAATCGCCTCCATCCGTCTGTTTGCCCGGTT  >  2:758623/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCCTGCGTCTGTTTGCCCGGTT  >  1:113073/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCgcgtt  >  1:1078181/1‑138
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGgt  >  1:172664/1‑141
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGct  >  1:991740/1‑141
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT  >  1:979052/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT  >  1:320799/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCAATGCGTATGTTTGCCCGGgt  >  1:801344/1‑141
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGACGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGCTTGCCCGGTT  >  2:762101/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGCACAACCTGAGCGATGGCGCGAAGGGAGATGCTCTGCACGAAATCGCCTCCCTGCGTCGGTTTGCCCAGTT  >  2:963044/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCAGTGGTACAACCTGAGCGATGGCGCGGTGGAAGATGCTGTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGgt  >  1:333549/1‑141
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTCGCAACCATGCTACGCATTCACTGCCTGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGACGATCCTCTGTACGAAATCGCCTCCCTGCGTCTGATTGCCCGGTT  >  2:124428/1‑143
                                                                                                                                               CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGATGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTAAAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAGACGGCTCCATGCGTCTGTCTGCCCGGag  >  2:174148/1‑141
                                                                                                                                                                                                                                                                                              
ACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1299810‑1299667
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT  >  NC_000913/1299703‑1299844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.