Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 4,001,645 Δ5 bp coding (220‑224/951 nt) corA → magnesium/nickel/cobalt transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40016442 (0.050)43 (0.990) 36/284 0.2 95.6% coding (219/951 nt) corA magnesium/nickel/cobalt transporter
?NC_000913 4001650 = 2 (0.050)coding (225/951 nt) corA magnesium/nickel/cobalt transporter

ATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA  >  NC_000913/4001506‑4001786
                                                                                                                                          |                                                                                                                                              
atcgattGGTCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGGCATAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcc                                                                                                                                            <  2:471077‑M1/140‑5 (MQ=255)
aTGGATTGAGCTGGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctcc                                                                                                                                            <  1:193594‑M1/143‑5 (MQ=255)
 tGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACAACGGCCTGCATctcct                                                                                                                                           >  2:182972‑M1/1‑138 (MQ=255)
   gATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGGACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttc                                                                                                                                         >  1:157846‑M1/1‑136 (MQ=255)
         tCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttc                                                                                                                                   >  1:716312‑M1/1‑130 (MQ=255)
         tCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGAACGTTTCTTTGAAGACGACGACGGCCTGCAGctccttcttcttc                                                                                                                                   >  2:131631‑M1/1‑130 (MQ=255)
           ttGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctt                                                                                                                                 <  1:424927‑M1/143‑16 (MQ=255)
            tgccaacccggacgacTACGAGCGGCTGCGCGTACAAGCTGAACTTGGCCAGAGCCTGGGAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttt                                                                                                                                <  2:300131‑M1/136‑17 (MQ=255)
            tGTCGAACCGGACGACGACGAGCGACTGCGTGTACAACCTTAACTTTTCCATATCCTGGCAACCCGCCCGGAATTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttt                                                                                                                                <  2:270007‑M1/143‑17 (MQ=255)
            tGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttt                                                                                                                                <  1:78312‑M1/143‑17 (MQ=255)
             gTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGGTTCTTTGAAGACGACGACGGCATGCATctccttcttgttgtttg                                                                                                                               >  1:696530‑M1/1‑126 (MQ=255)
                    cGGACGACGACGAGCGACCGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgc                                                                                                                        <  1:558893‑M1/143‑25 (MQ=255)
                        cgacgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaa                                                                                                                    <  1:665974‑M1/143‑29 (MQ=255)
                         gacgacgaGCGACTGCGCGTACAATCCGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttttttgaagatgcggaag                                                                                                                   <  1:75368‑M1/143‑30 (MQ=255)
                           cgacgaGCGCCTGGGCGGACAATCTGAACTTGGCCAGAGCCTGGCAAGCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagat                                                                                                                 <  2:148732‑M1/143‑32 (MQ=255)
                           cgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagat                                                                                                                 <  2:638947‑M1/143‑32 (MQ=255)
                            gacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCATGCATctccttcttcttctttgaagatgcggaagatc                                                                                                                >  2:174531‑M1/1‑111 (MQ=255)
                            gacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGCTTCTTTGAAGACGACGCCGGCCTGCATctccttcttcgtcttcgaagatgcggaagatc                                                                                                                >  2:453683‑M1/1‑111 (MQ=255)
                               gaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGCCGACGGCCGCCATcaccttcttcttctttgaagatgcggaagatcacg                                                                                                             >  2:162006‑M1/1‑108 (MQ=255)
                                                aTCTGAACTTGGTCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtg                                                                                            >  1:663214‑M1/1‑91 (MQ=255)
                                                  cggagcgtGGCCAGAGCCTGGCATCCCGCCGGGAGCTGGACGTCGTCGGGGCTTCGGCACGTTTCTGTGAGGGCGACGACGGCCTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTGGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGc                                                                                     <  2:384075/136‑1 (MQ=255)
                                                     aaCTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatt                                                                                       <  1:673866‑M1/143‑58 (MQ=255)
                                                       cTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGTCATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcattta                                                                                     <  2:662642‑M1/143‑60 (MQ=255)
                                                           gCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccat                                                                                 >  2:62761‑M1/1‑80 (MQ=255)
                                                             cAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcatcttctttgaagatgcggaagatgacgcgggtagcgccactgtggcgtttgccatgc                                                                               >  1:303682‑M1/1‑78 (MQ=255)
                                                                  ccTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgat                                                                          >  1:17896‑M1/1‑73 (MQ=255)
                                                                      gCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccctcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtc                                                                      <  1:704762‑M1/143‑75 (MQ=255)
                                                                        aaCCCGCCCGGAACTGGAAGCCATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGCACTG‑‑‑‑‑TGAGGGGGCTTTCTTCTTTGAAGTTGCGGAAGGTCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGgtcgt                                                               <  1:181056/143‑1 (MQ=255)
                                                                          cccgcccgGAACTGCAAGACCTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtct                                                                  <  2:529238‑M1/143‑79 (MQ=255)
                                                                            cgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgt                                                                <  2:112513‑M1/143‑81 (MQ=255)
                                                                                cgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgcttcc                                                            >  2:40230‑M1/1‑59 (MQ=255)
                                                                                           gACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagc                                                 <  1:464241‑M1/143‑96 (MQ=255)
                                                                                           gACAGCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagc                                                 <  1:19383‑M1/143‑96 (MQ=255)
                                                                                             cATCTAAGCATCGGCACGTTTCTCTGAAGACGAGTACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgt                                               <  1:396111‑M1/143‑98 (MQ=255)
                                                                                              aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtg                                              <  1:707696‑M1/143‑99 (MQ=255)
                                                                                                ggaAGCATCGGCACGTTGCTTTGAAGACGACGACGGCCTGCATctccttcttcttcttggaagatgcggaagagcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa                                            <  1:247704‑M1/142‑101 (MQ=255)
                                                                                                         ggCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgct                                   >  1:404365‑M1/1‑34 (MQ=255)
                                                                                                           cACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttt                                 >  1:389261‑M1/1‑32 (MQ=255)
                                                                                                               tttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgt                             >  1:135791‑M1/1‑28 (MQ=255)
                                                                                                                    ttGAAGACGACGTCGGCCTGCATctccttctccttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtggtggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgta                        <  2:359560‑M1/143‑121 (MQ=255)
                                                                                                                           cgacgacgGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtggactgcccgcttttcgtctgtaccgtgtg                 >  1:635978‑M1/1‑16 (MQ=255)
                                                                                                                               gacgGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtg             <  1:368891‑M1/143‑132 (MQ=255)
                                                                                                                                acgGCCTGCATctccttcctcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtgc            <  1:131631‑M1/143‑133 (MQ=255)
                                                                                                                                  tccctgCATctccttcttcttctgtgaagatgcggaagatcacgccggtaactccactgtggcatttaccacccgtgatggtcgtctgttcactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtgccc          <  1:62047‑M1/141‑135 (MQ=255)
                                                                                                                                          tctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatcggtgatggtcgtctgtttactctgcgtgcgcgtgacctgcccgcttttggtctgtatcgtatccgtccccgtagccta  >  2:349866‑M1/1‑1 (MQ=255)
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ATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCCGTA  >  NC_000913/4001506‑4001786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.