New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4158460	54 (1.250)	3 (0.070)	3/270	6.3	5.7%	intergenic (‑66/‑30)	oxyS/oxyR	sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator
	?	NC_000913	= 4158470	48 (1.170)					intergenic (‑76/‑20)	oxyS/oxyR	sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCTTTAGTTATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTA  >  NC_000913/4158318‑4158601                                                                                                                                               |                                                                                                                                              ggacttAGTTATGCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCa                                                                                                                                               <  1:440571/139‑1 (MQ=255)  gCTTTAGTTATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCCGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTCTCGCCAt                                                                                                                                              >  1:537381/1‑143 (MQ=255)  gCTTTAGTTATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCAt                                                                                                                                              <  1:638073/143‑1 (MQ=255)    tttAGTTATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTCCCTATCGCCATGa                                                                                                                                            >  1:41848/1‑143 (MQ=255)     ttAGTTATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATAGTTAATTGCTATTTTACATATCGCAATGaa                                                                                                                                           >  1:603232/1‑143 (MQ=255)     ttAGTTATTCGAGTTGAGAAACTCTAGAAACAGCCATTGACGTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGaa                                                                                                                                           <  1:739597/143‑1 (MQ=255)        gTTATTTGAGTTGTGATACTCTTGAAAGGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGGTCCGTTTCTGGGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTa                                                                                                                                        <  1:487788/143‑1 (MQ=255)          tATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATc                                                                                                                                      <  1:676692/143‑1 (MQ=255)            ttCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTTCCTATCGCCATGAACTATCGt                                                                                                                                    >  2:365782/1‑143 (MQ=255)                 gTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGa                                                                                                                               <  1:653303/143‑1 (MQ=255)                     cgaAACTCTCGAGACGGGCCGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATgga                                                                                                                           <  2:182156/142‑1 (MQ=255)                     agaAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATgga                                                                                                                           >  2:576171/1‑143 (MQ=255)                     agaAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCAATgga                                                                                                                           >  2:462568/1‑143 (MQ=255)                     agaAACGCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATgga                                                                                                                           <  2:352065/143‑1 (MQ=255)                       aaaCTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGTGGTGCCGCTCCGTTTCTGTGAGCCATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCGACCTATCGCCATGAACTATCGTGGCGATggagg                                                                                                                         <  2:71638/143‑1 (MQ=255)                         aCTCTCTAAACGGGCAGGGACTTCAAGGGTTACAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAggat                                                                                                                       <  1:92013/143‑1 (MQ=255)                         aCTCTCGAAACGGGCAGCGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAggat                                                                                                                       <  2:290563/143‑1 (MQ=255)                                aaaCGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGCggttggctcac                                                                                                                >  2:672510/1‑138 (MQ=255)                                        aGTGACTTCAAGGGTTAAAAGCGGTGTCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTc                                                                                                        <  2:9053/143‑1 (MQ=255)                                        aGTGACTTCAAGAGTTAAAAGAGGTGCCGGTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTc                                                                                                        <  1:458060/143‑1 (MQ=255)                                         gTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCg                                                                                                       <  1:119599/143‑1 (MQ=255)                                          tGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAGTGCTTGATAGGGATAATCGTTCATTGCGATTCTACCTATCGCCATGAGCTATCGTGGCGATGGAGGATGGATAATGAATATTCGt                                                                                                      <  2:470109/143‑1 (MQ=255)                                              ttCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGAGGGAGGATGGATAATGAAGATTCGTGATc                                                                                                  >  2:371009/1‑143 (MQ=255)                                              ttCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTCGCGATGTAGGTTGGGTCATGGATATTCGTTAta                                                                                                  >  2:182605/1‑142 (MQ=255)                                                 aaGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTg                                                                                               >  1:455210/1‑143 (MQ=255)                                                 aaGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTGCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTg                                                                                               <  1:334079/143‑1 (MQ=255)                                                    ggTTACAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGt                                                                                            <  1:366008/143‑1 (MQ=255)                                                            gcgctGCCGCTCCGTCTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCtggtg                                                                                    <  1:413282/139‑1 (MQ=255)                                                            gagGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCtgggg                                                                                    >  2:480005/1‑141 (MQ=255)                                                                  ccGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGCCGATGGAGGATGGATAATGAATATTCGTGCTCTTCAGAACCTGGTGGCATTg                                                                              >  2:657623/1‑143 (MQ=255)                                                                        cttttCTGTGAGCAATTGTCAGTCAGAATGCTTGATAGGGGTAATCGTTCAGTGCTAGTCTAGCTATCGCCAGGAACGAGCGTGGTGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGaa                                                                        <  2:147746/141‑1 (MQ=255)                                                                        cGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGACTATTCGTGATCTTGACTACCTGGTGGCATTGGCTGaa                                                                        >  1:136118/1‑143 (MQ=255)                                                                        cGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGaa                                                                        <  2:420199/143‑1 (MQ=255)                                                                          tttCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGGTAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAaca                                                                      <  1:232505/143‑1 (MQ=255)                                                                          tttCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTCGCATTGGCTGcaca                                                                      >  2:423400/1‑143 (MQ=255)                                                                           ttCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGAT‑ATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACAcc                                                                    <  1:441688/143‑1 (MQ=255)                                                                            tCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACAcc                                                                    <  1:542832/143‑1 (MQ=255)                                                                                tgAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAacaaaccag                                                                >  1:603875/1‑137 (MQ=255)                                                                                          tcagtcagAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGt                                                      >  1:533385/1‑143 (MQ=255)                                                                                                agAATGCGTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCa                                                <  1:495347/143‑1 (MQ=255)                                                                                                      cTTGATAGGGATAATCGTTCATTGCTATTCTACCTCTCCCCGTGAACTATCGTGGCGTTGGAGGATGGATACTGAATAGGCGTGATGTTGTGGACCTGGTGGCATTGGCTGAACACCGCCCTTTTCGGCGTGCGGCAGAGTcc                                          >  2:728472/1‑143 (MQ=255)                                                                                                       ttGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCt                                         >  2:766509/1‑143 (MQ=255)                                                                                                                    tcgttcgtTGCTATTCTACCTATCGACATGAACTATCGTGGCGATGGAGGACGGATAATGAATATTCGTGATCTGGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagcca                            <  1:182605/143‑1 (MQ=255)                                                                                                                     cGTTCATTGCTAGTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccag                           <  1:419729/143‑1 (MQ=255)                                                                                                                          aTTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGCATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGAc                      >  2:96300/1‑143 (MQ=255)                                                                                                                            tGCTATTCTACCTATCGCCATGCACTATCGTGGCGATGGAGGATCGATAATGAATATTCGTGATCTTGCGTACCGGGTGGCATTGGCTGACCACCGCCATTTTCGCCGTGCGGCAGCTTCCTGCCACGTCAGCCAGCCGACGc                    >  2:292975/1‑143 (MQ=255)                                                                                                                            tGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCAGTGGCTGAACACCGCCATTTTGGGCGTGCGGGAGATTCCTGGCACGTTAGCCAGCCGACGc                    >  2:693282/1‑143 (MQ=255)                                                                                                                               tATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATCGATAATGCATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCGCGTTCGCCAGCCGACGCTTa                 >  2:101913/1‑143 (MQ=255)                                                                                                                                   cTACCTTTCGCCATGAACTATCGTGGCGATGGAGGATGGATAACGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCgg             <  1:203530/143‑1 (MQ=255)                                                                                                                                          tCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGCTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTCACCGGGcgactt      >  2:26775/1‑138 (MQ=255)                                                                                                                                           cGCTATGGACTATCTTGGCGATGGAGGATGGATAATGAATATTCGTCACCTTGCGTACCTGGTGGCATTGGCCGAACACCGCCATTTTCGGGGTGCGGCAGATTCCTGCCTCGTTAGCCAGCGGACGCTTAGCGGGCAAATTc     <  2:409660/143‑1 (MQ=255)                                                                                                                                           cGCCATGACCTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTc     <  2:525320/143‑1 (MQ=255)                                                                                                                                            gCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGACGACGCACATCGGGCAAATCCg    >  2:583352/1‑143 (MQ=255)                                                                                                                                            gCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGGGCGGCAGGTTCCTGCCCCGGTAGCCAGCCGACGCCtggctggctccttcg    >  1:67795/1‑136 (MQ=255)                                                                                                                                              cATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTa  <  2:276151/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              GGCTTTAGTTATTCGAGTTGAGAAACTCTCGAAACGGGCAGTGACTTCAAGGGTTAAAAGAGGTGCCGCTCCGTTTCTGTGAGCAATTATCAGTCAGAATGCTTGATAGGGATAATCGTTCATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTA  >  NC_000913/4158318‑4158601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.