Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 30 [1] [0] 29 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158581 (0.020)27 (0.670) 21/264 1.0 98.3% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815803‑3816080
                                                                                                                                          |                                                                                                                                           
ctgcgtgctaagcgcaaattcaatatactcgcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                                                                         <  1:66355‑M2/5‑1 (MQ=255)
      gctaagcgcacattcaataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaatatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                   <  1:687540‑M2/11‑1 (MQ=255)
      gctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                   <  1:677044‑M2/11‑1 (MQ=255)
      gctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                   <  1:676336‑M2/11‑1 (MQ=255)
      gctaagcgcaaattcaataaactggcgctgatatgctttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                   <  2:679652‑M2/11‑1 (MQ=255)
      ctaaacgcaaattgaataaactggcgttgatatggtgtcatgcattcactcctcatcttacatatcaacagacaaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                   <  2:467845‑M2/11‑1 (MQ=255)
        taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaactcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                                                                 <  2:687071‑M2/13‑1 (MQ=255)
            cgcaaattcaatacactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                             <  1:594596‑M2/17‑1 (MQ=255)
             gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaacggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAat                                                                                                                            >  1:194797‑M2/126‑143 (MQ=255)
               aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagattgccagcgccgccttctgaCGTCCCCTGCActtcatgca                                                                                                                          >  2:416040‑M2/124‑139 (MQ=255)
                   tcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcg                                                                                                                      <  2:645478‑M2/24‑1 (MQ=255)
                                gctgatatggtttcatgccctcgctcctcaacttgcttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                         <  2:451331‑M2/37‑1 (MQ=255)
                                     tattgtttcatgcctttgctcctcatctttcttttctacagacaaaaaaatggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                    <  2:487034‑M2/42‑1 (MQ=255)
                                          tttcatgccttcactcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttagaaaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGACGCTCCCGTTTTCGAACATCACTACGt                                                                                               >  1:314826‑M2/97‑143 (MQ=255)
                                            tcatgccttcgctcctcatcttacttctctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                             <  1:299286‑M2/49‑1 (MQ=255)
                                            gcatgccttcgctcgtcatcttacttttctacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                             <  2:194797‑M2/49‑1 (MQ=255)
                                                              tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                           >  1:573549‑M2/77‑143 (MQ=255)
                                                                         tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAgagtctcccac                                                                >  2:87700‑M2/66‑138 (MQ=255)
                                                                                           gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc                                              <  1:91452‑M2/96‑1 (MQ=255)
                                                                                                atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCATCGTATTCCCGCTTGCAAACCGCtt                                         >  1:677687‑M2/43‑143 (MQ=255)
                                                                                                 tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                        <  2:406828‑M2/102‑1 (MQ=255)
                                                                                                 tcagtcgccttaaaaatcagtgtgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                        <  1:432886‑M2/102‑1 (MQ=255)
                                                                                                       gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGtt                                  <  2:573549‑M2/108‑1 (MQ=255)
                                                                                                        ccttaaaagtcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                 <  2:472608‑M2/109‑1 (MQ=255)
                                                                                                                   agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTccgcc                      >  1:419439‑M2/24‑141 (MQ=255)
                                                                                                                           agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTg              >  1:656408‑M2/16‑143 (MQ=255)
                                                                                                                             cgccgcctgctgcCGTCCCCTGCACTGCAGTGGTGCGCCCGTCTTCGGTCATCACTACGTGCATGGCGGTCTCTGCGGCTGTGTCTTCAACGTATGCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg            <  2:130188‑M2/130‑1 (MQ=255)
                                                                                                                                  ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAAATACGGGTAc       >  1:337477‑M2/9‑143 (MQ=255)
                                                                                                                                       tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGGTCACAATTCCGACAGAACCTGCGGCTACCATcc  >  1:168285‑M2/4‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                           
AAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC  >  NC_000913/3815803‑3816080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.