New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1388025 =	24 (0.970)	3 (0.120)	3/500	2.2	11.7%	coding (1306/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
	?	NC_000913	1388107 =	22 (0.910)					coding (1388/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase
Rejected: Frequency below/above cutoff threshold.

GTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTC  >  NC_000913/1387837‑1388346                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                ctgatggtgttgcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgttctgggataattgcgataaagctgggttaataacgagcgttcaaaacggctggtgatttcgtccagcgaaccttccatcgcatcttcgcccacggctacccttgcggcgtcataatcccgcaacaaaagaccctgtgaacgaaccg                                                                                                                                                                                                                                             >  2:211130‑M2/271‑272 (MQ=255)                 gCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGGGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGaa                                                                                                                                                                                                                              <  1:15400/274‑1 (MQ=255)                     ttagcggAGCTGTGCGTGGCCCGCTTTGCCGACGGGCAGGGCGTGCCGCGTCCGAAACGGGCCTCTGACCTGAATACGGTACGTACGCGTTATGCGTGGCCGGGAAATGGGCGGCAGGTAAAGAACGCTATCTATCGGGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCt                                                                                                                                                                                                                          <  2:137103/268‑1 (MQ=255)                     ttAACTGGCGTGTTCGGGGCCCGCTTTGGCGACGAGCAGGGCGCGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCt                                                                                                                                                                                                                          <  2:163257/274‑1 (MQ=255)                             gCTGGTCGCCGCCCGATTTGCCGACTGGGAGGGCGTGCCGCGTCCGAAACTGGCAGGTGAACTGAATACTGTACTTACCGGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTAt                                                                                                                                                                                                                    <  2:182436/272‑1 (MQ=255)                               tgctcgtcgCCCGCTTTGCCGCCGAGCCGGTCGCGCCGCGTCCGAAACTGGCCGGTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAAcc                                                                                                                                                                                                               <  2:54231/272‑1 (MQ=255)                                                                                       gACATGAATACTGTAGTTACGGGGTAGGCGTGGCCGGGAAAGTTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTc                                                                                                                                                       <  2:14367/275‑1 (MQ=255)                                                                                                  tGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATAcc                                                                                                                                                >  1:17980/1‑271 (MQ=255)                                                                                                  tGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGGTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGAGTATGACGCCGCAACGGTAGCCGTGGGCGAAGCTGCGATGGAAGGTTCGCTGGACGAAAGCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAACCTGGCAAAACGTCTAGGCGTTTCACATACCGCGa                                                                                                                                            >  1:5671/1‑275 (MQ=255)                                                                                                    tACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAGTCACCAGCCGTTTTGAACGACCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAACCGTCCCGGCGTTTCCCATACCGCGCtt                                                                                                                                          >  2:22617/1‑275 (MQ=255)                                                                                                    tACTTACCGGTTATGGCGGGCCGGGAAAGTTGCGGCAGTATAAGAACGCTATCCATCGTGCAGTTATACAACTGGGCGGGTATTAGCTGCGTCACCAGGATATTTTTTTGCAGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGTAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGTTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCTGCGTTTCACATACCGCGAt                                                                                                                                           <  2:196466/274‑1 (MQ=255)                                                                                                      cTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGa                                                                                                                                            <  2:17980/271‑1 (MQ=255)                                                                                                                       gCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGAAAAACGTCTCGGCGTTTCCCATACCGCAATTGCCAATAAGATGCGGGaaa                                                                                                                       >  1:116988/1‑274 (MQ=255)                                                                                                                                                 aCGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAACAAGTTTCGGGAATATGGTCTGAGTCAGAAGAAGAACGaa                                                                                             >  2:147161/1‑275 (MQ=255)                                                                                                                                                                 aCTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTTCCAATAAGTTGCGGGAATATGGTCTGAGTCAGACGAAGCACGCAGAGTAAGAGCGAatat                                                                             >  2:81928/1‑275 (MQ=255)                                                                                                                                                                               aCGGTTATGGGCTGCGTCCACAGGGTCTTTGTTTGCCGGATTATGGAGCGTCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGGTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCaa                                                               <  2:230978/275‑1 (MQ=255)                                                                                                                                                                                        cggttCGTTCACAGGGTCTTTTGTTGCGGGATTATGACGCCGCAAGGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGTTATTAACCCAGCTTTATCGCAATTATCCCAGAACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAg                                                      >  2:211130‑M1/6‑275 (MQ=255)                                                                                                                                                                                             CGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGACTCGGCGTTTCACATACCGCGATTGCAAATCAGTTGCGGGAATATGGTCTGAGTCAGAAGCAGAACGAAGAGTACGCGCGAATATGCCTGATGGTGGAACACCATCAGGCata                                                 <  1:56732‑M1/275‑1 (MQ=255)                                                                                                                                                                                                       tatttttGTTGCCGGATTATGAGGCCGCAACGGTAGCCGTGGGCGAAGATTCGATGGAAGGTTCGCTGGACGAAATCACCAGCCTTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTAt                                        <  2:116987/271‑1 (MQ=255)                                                                                                                                                                                                          ttttGTTCCCGTATGATGACGCGGCAACGTTAGCCGTGGGCGACGTTTGGATGGCAGGTTCGCTGGACGAAATCACCAGCCGTTTTCAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCACGGCGTGTCACATACCGCGATTGCAAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCtt                                    <  1:147162/275‑1 (MQ=255)                                                                                                                                                                                                              atcgcatcttcgcccacggctaccgttgcggcgtcataatccggcaacaaaatatcctgtggacgAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCt                                                                         >  2:93895‑M2/66‑234 (MQ=255)                                                                                                                                                                                                               tggCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTGTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGt                               <  2:68715/273‑1 (MQ=255)                                                                                                                                                                                                                  catcttcgcccacggctaccgttgcggcgtcataatccggcaacaaaatatcctgtggacgAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATg                                                                     <  1:93896‑M2/173‑1 (MQ=255)                                                                                                                                                                                                                         aTGACGCAGCAAGCGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCTCTGGAACAAATCACCAGCCGGTTTGAACGCTCGGTATTAACCCAGCTTTATCTCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCagag                     <  1:16545/275‑1 (MQ=255)                                                                                                                                                                                                                                           ccGTGGGCGAAGATTCGATGGAAGGTTCGCTGGGCGAAATCACCAGCCGTTTTGAACGCTAGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCt   <  1:230405/275‑1 (MQ=255)                                                                                                                                                                                                                                            ggggggCGAAGATGGTAGGGAAGGATGGTTGGACGAAATCTACATCGGTTTTGCACGCTCGGGATTAACCCATCTTTATCTCAATCAGCCCAGCACGCGCACACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAGTAAGTTGCGGGAATATGGTCTCAGTCAGAAGAAGAACGATGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCt   <  2:109714/271‑1 (MQ=255)                                                                                                                                                                                                                                             gTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACCACATCAGGCATATTAAATTATGCATTCAGTACAGCCAGGGCTGCTTCGTAATCCGGCTc  >  1:5499/1‑274 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                GTCCGCAGGACATCATGCCGTTAACTGAGCTGTTCGTCGCCCGCTTTGCCGACGAGCAGGGCGTGCCGCGTCCGAAACTGGCCGCTGACCTGAATACTGTACTTACGCGTTATGCGTGGCCGGGAAATGTGCGGCAGTTAAAGAACGCTATCTATCGCGCACTGACACAACTGGACGGTTATGAGCTGCGTCCACAGGATATTTTGTTGCCGGATTATGACGCCGCAACGGTAGCCGTGGGCGAAGATGCGATGGAAGGTTCGCTGGACGAAATCACCAGCCGTTTTGAACGCTCGGTATTAACCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTC  >  NC_000913/1387837‑1388346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.