New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729405	32 (0.590)	7 (0.130)	6/272	5.7	18.6%	noncoding (40/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	3943467 =	NA (NA)					noncoding (33/76 nt)	gltU	tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAA  >  NC_000913/2729263‑2729543                                                                                                                                                 |                                                                                                                                           gcttttCAGCTTGTTCCAGATTTTTAAAGCGCAAATATATCAAACAAGACTTAACAGTCCGTTGTGAGTTATTGATGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCTC‑‑TTGGGGATTCGAACCCCTGTTAccgcc                                                                                                                                            <  2:485320/141‑1 (MQ=18) aagtcacAGCTAGATCCAGATTTATAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTAccgcc                                                                                                                                            <  1:395273/137‑1 (MQ=255)        aGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGCTCGGCCACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAg                                                                                                                                     <  1:887649/143‑1 (MQ=255)          cTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGGTTCGAACCACTGTTAGCGCGGGGAGAggg                                                                                                                                   >  2:958162/1‑143 (MQ=18)           ttGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGc                                                                                                                                  >  1:471076/1‑143 (MQ=255)           ttGACCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGc                                                                                                                                  <  1:549489/143‑1 (MQ=255)              aTCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGTTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGGGAAGGGGCgtg                                                                                                                               >  2:51461/1‑141 (MQ=255)                ccAGATTTTTAAAGAGCAAATATATCAAACAATACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgtgt                                                                                                                             >  1:977812/1‑143 (MQ=255)                 cAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                                            >  1:510494/1‑143 (MQ=255)                  aGATTTTTAAAGAGCAAATATATCAAACAAGATTTAGCGTTCTGGTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAGCCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTcc                                                                                                                           <  2:960245/143‑1 (MQ=17)                     tttttAAAGAGCAAATATAGCAAACGAGACTTACCAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCGCAACCCAGCAAGGGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                                                        <  2:219114/143‑1 (MQ=18)                      ttttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTCTCCTggg                                                                                                                       >  1:425054/1‑143 (MQ=255)                       tttACAGAGGAAATATATCAAACAAGACGTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAGCCGGCAGGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                                                      <  2:325335/143‑1 (MQ=17)                       tttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                                                      <  1:874148/143‑1 (MQ=255)                          aaaGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGGTTCGAACCCCTGTTACCGCCGGGAAAGGGCGGTGTCCGGGGCctc                                                                                                                   >  2:456747/1‑143 (MQ=255)                            agtgCAAATATTTCAAACAAGACGTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCATGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                                                 <  2:922761/140‑1 (MQ=255)                            agagCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATAGTGAGGTCGGCGACTTTTGCTGGAAAGCCCACAAAGGGCGTGCAGTTTTGTGGA‑TC‑AACCGCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                                                 <  1:458563/143‑1 (MQ=12)                                   atatatCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                          <  1:535367/143‑1 (MQ=255)                                   atatatCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                          <  1:529201/143‑1 (MQ=255)                                          aaaCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGacac                                                                                                   <  1:145857/143‑1 (MQ=255)                                                   ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc                                                                                          >  2:497338/1‑143 (MQ=40)                                                         gTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGACAGGGCGGTGTCCTGGCCCTCTAGACGAAGGGGACACGAAAATTGCTTATCa                                                                                    >  2:60702/1‑143 (MQ=25)                                                          tCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGCAAATTGCttcccac                                                                                   >  1:309540/1‑138 (MQ=255)                                                              ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGt                                                                               >  1:961573/1‑143 (MQ=32)                                                              ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGt                                                                               >  1:837152/1‑143 (MQ=32)                                                                 tGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                            <  1:822314/143‑1 (MQ=32)                                                                 tGAGATATTGACGTCGGCGACTTTCACTCACAAACCAGTAAGTGGCGTCCCC‑‑TAGGGGATTCGGACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                            <  2:935598/143‑1 (MQ=12)                                                                     atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGa                                                                        >  2:624570/1‑143 (MQ=32)                                                                     atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATGGCTTATCACGCGTTGCGCGa                                                                        >  2:470858/1‑143 (MQ=17)                                                                        ttGAGGTACGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGCGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                     <  1:63748/143‑2 (MQ=11)                                                                                                   cccgCAAGGGCCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGTAGGTTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAAt                                          <  1:888838/140‑1 (MQ=1)                                                                                                          gtcgCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGc                                   <  1:282967/140‑1 (MQ=1)                                                                                                                               tcggagcccTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCTCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTc                <  2:771321/137‑1 (MQ=0)                                                                                                                                             cctccgTGAAAGGGCGGTGTCGTGGGCCTCTAGACGAATGTGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCaa  <  1:264597/140‑1 (MQ=0)                                                                                                                                                 |                                                                                                                                           AATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAA  >  NC_000913/2729263‑2729543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.