Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 618,513 IS5 (+) +4 bp coding (260‑263/1134 nt) fepE → regulator of length of O‑antigen component of lipopolysaccharide chains

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 273955 =NA (NA)44 (1.180) 38/284 0.1 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 618513 = 0 (0.000)coding (260/1134 nt) fepE regulator of length of O‑antigen component of lipopolysaccharide chains
* ? NC_000913 = 275149NA (NA)40 (1.080) 31/282 0.2 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 618516 0 (0.000)coding (263/1134 nt) fepE regulator of length of O‑antigen component of lipopolysaccharide chains

GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTT  >  NC_000913/275010‑275289
                                                                                                                                           |                                                                                                                                            
gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACGGa                                                                                                                                           >  2:601685/1‑143 (MQ=14)
   agtctcTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACGTGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc                                                                                                                                        <  2:493445/141‑1 (MQ=21)
      ctctTTTCTGGTCTGACGGCGATTACGGCTGATTTCACTGTCGGCGAAGGTCGGTGGGCGACCCAAGATCACACCTGGGCTGCGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGtt                                                                                                                                     >  2:477514/1‑143 (MQ=11)
       tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGAATCATGATGAACAGTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTGCGCACCTTCCGGCGGCGtca                                                                                                                                    >  2:519278/1‑141 (MQ=11)
       tctGTTGTGGTCTGGCGGCGCTTACTGCCGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa                                                                                                                                    <  2:129590/143‑1 (MQ=255)
       tctGTTCTGGTCTGAGGGCGCGGACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTa                                                                                                                                    <  2:500844/143‑1 (MQ=255)
         ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACTTGATCTCATCTCAGGTCCTTGTTCGCACCTTCCGGCGGCGTTacg                                                                                                                                  >  2:431930/1‑141 (MQ=11)
         ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACTTGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg                                                                                                                                  >  2:274468/1‑143 (MQ=255)
                 tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcg                                                                                                                          >  1:474191/1‑143 (MQ=255)
                         cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGATGGCGGCCCtttt                                                                                                                  >  2:650173/1‑143 (MQ=255)
                            ttACTGCTCAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt                                                                                                               <  1:656927/143‑1 (MQ=255)
                              aCTGCTGTATTCACTGTCGGGGAAGGTATGTTCATGTCTCATGATGAGCCCTCTTCTATGGCTCCAGATGACAAACAGGTTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt                                                                                                             <  1:469639/143‑1 (MQ=18)
                                tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt                                                                                                           >  1:71543/1‑143 (MQ=255)
                                tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt                                                                                                           >  2:512634/1‑143 (MQ=255)
                                  ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa                                                                                                         <  1:185212/143‑1 (MQ=255)
                                  ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTCTTTGTATCTGa                                                                                                         >  2:487130/1‑143 (MQ=255)
                                            tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcc                                                                                               >  2:27170/1‑143 (MQ=255)
                                              tCGGCGAAGGTAAGTTGATGACTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcccc                                                                                             <  2:53094/143‑1 (MQ=255)
                                              tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGTGGCCCTTTTTGTATCTGATTATTAATcccc                                                                                             <  1:65973/143‑1 (MQ=255)
                                                ggCGAGGGCAGGTTGATGCCTCCTCATGAAGCCTGTTATAGGGCTCCAGATGACAAACATGATCTCATATCAGGGACTGGTTCGCACCTTCCTGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAc                                                                                           <  2:189867/143‑1 (MQ=21)
                                                ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACCTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCTGCCCTATTCGTATCCGCTTATGAATcccccc                                                                                           >  2:564064/1‑141 (MQ=17)
                                                     aGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCt                                                                                      <  1:406016/143‑1 (MQ=255)
                                                     aGGGAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGAGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCt                                                                                      <  1:491716/143‑1 (MQ=255)
                                                       gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAt                                                                                    >  1:9939/1‑143 (MQ=255)
                                                        tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTAGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCCTTTTGTATCTGATTATTAATCCCCACCCGCTAtt                                                                                   >  2:411047/1‑143 (MQ=255)
                                                          aGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa                                                                                 <  1:199812/143‑1 (MQ=255)
                                                            ttGATGACTCATGATTAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGACCCTTTTCGTATCTGATTATTAATACCCAACCGCGATTaaac                                                                               >  2:437351/1‑141 (MQ=21)
                                                            ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCGCCCCGCTATTAAgc                                                                               >  1:595969/1‑143 (MQ=255)
                                                                    tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTCTTAAGCGCCCGgcg                                                                       >  1:344213/1‑143 (MQ=255)
                                                                        gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCggg                                                                   >  1:609485/1‑143 (MQ=255)
                                                                         atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCCGATTATTAATCCACACCCGCCATTACGCGCCCGGCGCAGGc                                                                  >  2:255351/1‑143 (MQ=25)
                                                                              cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTg                                                             >  1:591355/1‑143 (MQ=255)
                                                                               ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGAATTGTTGGCACCTTCCGGAGGCGTTATGAGATGGCGTCCCTTTTTGTATGTGATTTTTAGTCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGc                                                            >  1:419755/1‑143 (MQ=37)
                                                                                 tGTTCTATGGCTGCATATGACAAACATGAGCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGt                                                          <  1:430389/143‑1 (MQ=255)
                                                                                 tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGt                                                          <  1:93549/143‑1 (MQ=255)
                                                                                     cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGACGCGTTATAAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTgg                                                      >  1:252823/1‑143 (MQ=255)
                                                                                       aTGGCTCCAGATGACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTg                                                    <  1:576317/143‑1 (MQ=255)
                                                                                       aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGTGTTATGAGCTGGCGGCCCTTTTTGTATCTGATGACTAATCCCCACCCGCTATTACGCGCCCGGCGCGGCCAGCCGCGCCTgggg                                                    >  2:205755/1‑141 (MQ=25)
                                                                                       aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGAAGGCGTTATGCGCTGGCGGCCCTTTTTGTATCTGATTATTCCTCCCCACCCGCTATTAAGCGCCCGGCGCCGGCCTCTCCGCCCGGtc                                                    >  2:468968/1‑142 (MQ=25)
                                                                                          gCTCCAGCTGACAAACATGATCTCATATCAGGGACTTGTTCGCAGGTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAg                                                 <  2:474191/143‑1 (MQ=255)
                                                                                          gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGGTCGCACCTTCCGGAGCGGCAGTTAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAg                                                 <  1:668026/143‑1 (MQ=37)
                                                                                            tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGACTCTTACTCCCCACCCGCTATTAAGCACCCGGCACGGGCCTCTGCGCCTCGTGCCggc                                               >  2:289821/1‑142 (MQ=37)
                                                                                               aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCACACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTg                                            >  2:494378/1‑143 (MQ=255)
                                                                                                  tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACt                                         <  1:53121/143‑1 (MQ=255)
                                                                                                  tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACt                                         >  1:659898/1‑143 (MQ=255)
                                                                                                   gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACtt                                        <  1:236930/143‑1 (MQ=255)
                                                                                                                  atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATATGATAATTTTTACTCGCCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACa                         >  1:422543/1‑143 (MQ=255)
                                                                                                                    atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACaaa                       <  1:233938/143‑1 (MQ=255)
                                                                                                                    atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTGTTTGTATCTGATTATTAATCCCCACCCGCAATTTGTCACCCGTCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTGGCATCGTGTTatccaa                       >  2:583383/1‑138 (MQ=255)
                                                                                                                           aCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAACTGATTAGGAATACACAACAGCTCGTAGGCGCCCGGCGCGGGCATCTGCGTATGGTGCAGGGGGGACTTTGCATGCTGTTGACAGAAGCGGta                >  2:80373/1‑143 (MQ=255)
                                                                                                                             ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGtata              >  1:267900/1‑143 (MQ=255)
                                                                                                                                  cGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACaaa         <  2:378567/143‑1 (MQ=255)
                                                                                                                                   gCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAAc        <  1:477514/143‑1 (MQ=255)
                                                                                                                                         gccGGCGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACcttctt  <  1:95742/142‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTT  >  NC_000913/275010‑275289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.