| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3567519 = | 47 (1.260) | 3 (0.080) | 3/272 | 5.1 | 6.2% | coding (515/1434 nt) | glgA | glycogen synthase |
| ? | NC_000913 | 3567558 = | 46 (1.290) | coding (476/1434 nt) | glgA | glycogen synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATCTCGCGAGCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGG > NC_000913/3567377‑3567659 | gATCTCGCGAGCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CCGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCatgtgat > 2:274095/1‑143 (MQ=255) cgAGCGTAGTTTGGACTGTCTGCCGTACTGGGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCTCATGAATATTAAAGAATGACCATTGCAATTGGATGTCATTCATGTGATGTGCATa < 2:475336/143‑1 (MQ=255) gCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATaaaa > 1:163073/1‑143 (MQ=255) tAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACAt > 1:290032/1‑143 (MQ=255) gTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGcc > 2:392774/1‑143 (MQ=255) gTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGAACAAAAGGTGAGGATGTCATTCATGTGATGTGCATAAAACATGcc > 1:122601/1‑143 (MQ=255) gTTGGACTGACCGCCGTAATGTG‑CCAGCCCACTAGCGCTCTGGCCTTCAGGACAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCCTGTGATGTGCATCAAACATGcc > 2:49747/1‑143 (MQ=255) aCTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCATCACGAAAGAGATTTGTCCGTTGAATTCCAGCCCACGAATATTAAAGAATGACCATGGCAATTGGATGCACTTCATGTGATGTGCATAACACAGACCTTGAt > 2:475547/1‑143 (MQ=255) cTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATa < 1:504831/143‑1 (MQ=255) cTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATa < 1:47607/143‑1 (MQ=255) gccgccgTAATGTGATCGGCATAGTA‑CACACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGc < 1:27377/142‑1 (MQ=255) aCCGCCGTAATTTGTTCGGCATAGTA‑CAGACCGGCCTTCAGGAACGAGATTTGCCCGTTGAATTCCAGCCCATGAATATTACAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGc < 2:525931/143‑1 (MQ=255) gccgTAATGTCATCGGCATAGTA‑CAGACCGGCCTTCACGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGCATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACACCCCTTGCTAGGCCAg > 2:641925/1‑143 (MQ=255) ccgTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAACGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAgg < 1:459455/143‑1 (MQ=255) gATCGGCAGAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGcaca < 1:444229/143‑1 (MQ=255) cATAGTA‑CAGACCCGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAac < 1:35930/143‑1 (MQ=255) aTAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAaca < 1:546791/143‑1 (MQ=255) aGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACAcc > 1:479051/1‑143 (MQ=255) cAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTACACACCGACt > 1:103448/1‑143 (MQ=255) cGGCCTTCCGGAAAGTGAGTTGTCCGTTGCTTTCCAGCTTTTCGATATTAGAGAATGACCAGTGCATTTGGTTGTCATTCATGTGATGTGCATAGAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGcc < 2:508240/143‑1 (MQ=255) cGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGcc > 2:144667/1‑143 (MQ=255) ctccAGGAAAGAGCCTCGTCCGTTGAATTCCAGCCCAGGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGAc < 1:131452/140‑1 (MQ=255) ggAAGGAGATGTGTCCGTTCAATTCCAGCCCATGCATATGAAATAATGACCACGGCAATTGGACGTCATTCATCTGATGCGCATAACGCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcg < 1:154531/143‑1 (MQ=255) ggAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGGTAGGCCAGGTTGTGAACAGTACACACCGACTTCGCCGGACGccag > 2:203747/1‑141 (MQ=255) ggAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATAATAAAGAATGACCATGGCAATTGGATGACATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTACACAGTAAACACCGACCTCGCCCGACGcccc > 2:203828/1‑142 (MQ=255) gAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcgc > 2:153860/1‑143 (MQ=255) aaaGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcgcg > 1:410001/1‑143 (MQ=255) tGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAg < 1:392774/143‑1 (MQ=255) gTCCGTTGAATTCCAGCCCATGAATATTAAAGAAGGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGa < 2:623680/143‑1 (MQ=255) gTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCACTTGAATGTCAATCATGTGATATGCATAAAAAATGCCTAGATAGGCCAGGTAGTGCACAGTAAAAACCAACGACGCAGGACGCGCGCGCGCCGCCaacaacg > 2:106691/1‑137 (MQ=255) gcttCCAGCCCTTTAATATTGAACTATGACGCTGGCAATTGGGTGTCATTCATGTGCTGTGCCTAACACACGCCTTGATAGGCCAGGTTGCGCCCAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGCTACGCAgg < 2:459312/141‑1 (MQ=255) ccATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGcc > 2:175911/1‑143 (MQ=255) cATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCt > 1:625495/1‑143 (MQ=255) atatTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATg < 1:157757/143‑1 (MQ=255) aagaaagaCCATGGCCATGGGATGGCATTCATGTGATGTGCAGAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTc < 1:452892/143‑1 (MQ=255) aaGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGGAGGCGCAAGGCCTGCATGCCAGTc > 1:320837/1‑143 (MQ=255) tGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTgcg < 1:407034/143‑1 (MQ=255) ggCAATTGGATGTCATGCATGTGATGTGCATAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcac < 1:76917/143‑1 (MQ=255) ggCAATTCGATGTCATGCATGTGATGTGCATAAAGCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcac < 2:257252/143‑1 (MQ=255) aaTTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGGCTGCATGCCAGTCGTGCGCATGgaccac > 2:45007/1‑143 (MQ=255) aaTTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcaccac > 1:164855/1‑143 (MQ=255) ggATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCa < 1:324763/143‑1 (MQ=255) tGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGa > 1:534930/1‑143 (MQ=255) catGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGa < 1:151275/143‑1 (MQ=255) tgtgatgtgCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCCCCAGATCCGGACCCCAGact > 2:168088/1‑141 (MQ=255) tctgatgtgCATAAAACGCGCCTTGATAGGCCAGGTCGTGCACAGTAAACAGCGACTTCGCCGGACGCCGGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAAt < 2:459252/141‑1 (MQ=255) gatgggCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCTGCATGCCACTCGTGCGCATGCACCCCACCAGGACGCCAGAATggg > 2:515251/1‑143 (MQ=255) | GATCTCGCGAGCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGG > NC_000913/3567377‑3567659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |