New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 61014147 (1.260)3 (0.080) 3/270 5.1 6.4% noncoding (25/98 nt) RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 2291200 43 (1.220)noncoding (48/199 nt) RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAT  >  NC_000913/2291059‑2291335
                                                                                                                                             |                                                                                                                                       
tagatatTGGCAGTCTGCTGCGTAGTCTCGATGTCTGGTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTg                                                                                                                                        <  2:302422/140‑1 (MQ=255)
                  tgcGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                                      <  2:554837/143‑1 (MQ=255)
                   gcGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTAt                                                                                                                     <  2:382593/143‑1 (MQ=255)
                    cGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCACCCGTCTGAGATTTATGACAACCGCACAACTGCCTGATGCGCTACGCtgctc                                                                                                                    >  1:215746/1‑139 (MQ=255)
                           tCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                             >  1:299796/1‑143 (MQ=255)
                           tCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                             >  1:508459/1‑143 (MQ=255)
                                   cGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGGTTTATGACCAGCGCAAGACTGCCTGATGCGCTACGCTTATCAGGCCTAAGTGgatc                                                                                                     >  1:34510/1‑143 (MQ=38)
                                    gCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAAGCGCTACGCTTAACAGGCCTACGTgcctcg                                                                                                    >  2:405571/1‑138 (MQ=255)
                                      tCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGTGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGgatcgat                                                                                                  <  1:140574/143‑1 (MQ=255)
                                       cACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAAATACCTGATGCGCTACGCTTATCAGGCCTACGTGgatcgatc                                                                                                 >  1:60738/1‑143 (MQ=255)
                                        aCGCGTGGCGGCCACCATTCTGTTCCTGCAACAACTCGTGGCACAAGAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCa                                                                                                >  1:675012/1‑143 (MQ=255)
                                               gcggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTAtt                                                                                         >  1:556630/1‑143 (MQ=255)
                                                cggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTCTTg                                                                                        >  2:31246/1‑143 (MQ=255)
                                                 ggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGa                                                                                       >  2:360937/1‑143 (MQ=255)
                                                  gcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGaa                                                                                      >  1:498657/1‑143 (MQ=255)
                                                   cctccaTGCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAAt                                                                                     <  2:196795/140‑1 (MQ=255)
                                                      ccaTTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTCCCTGATGCGCTACGCTTATCCGGCCTACGTGGATCGATCAATTTATTGAATTTa                                                                                  <  1:350216/143‑1 (MQ=255)
                                                             gTTCTTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtt                                                                           <  1:536936/143‑1 (MQ=255)
                                                               tCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtttt                                                                         >  1:315388/1‑143 (MQ=255)
                                                                 cTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCCATCAATTTATTGAATTTACCCAAATTTGt                                                                       >  2:25795/1‑143 (MQ=255)
                                                                  tGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCACTTAATGCAATTTACACAATTTTGTa                                                                      >  2:262450/1‑143 (MQ=255)
                                                                       caacGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCg                                                                 >  1:585608/1‑143 (MQ=255)
                                                                         gcgcgGGGCAGAGTAAAAATAGCCCGATGGAGTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGa                                                               <  1:69360/142‑1 (MQ=255)
                                                                           gcgGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATa                                                             >  1:511057/1‑143 (MQ=255)
                                                                             ggggCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAg                                                           >  2:224072/1‑143 (MQ=255)
                                                                                gCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGTTGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCg                                                        >  1:613775/1‑143 (MQ=255)
                                                                                gCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGCATTTACACCATTTTGTAGGCCGGATAAGGCg                                                        >  2:593452/1‑143 (MQ=255)
                                                                                  acaATAAAAATAGCACGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAGTTTATTGAATTTACACAATTTTGTAGGCCGGACAGGGCGtt                                                      >  1:87797/1‑143 (MQ=255)
                                                                                     aTAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCAc                                                   >  2:126337/1‑143 (MQ=255)
                                                                                            tAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACCATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                            >  1:223626/1‑143 (MQ=255)
                                                                                            tAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                            <  2:585756/143‑1 (MQ=255)
                                                                                            gaGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                            <  2:212412/142‑1 (MQ=255)
                                                                                               cccGATGCATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                         <  2:56168/143‑1 (MQ=255)
                                                                                                ccGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCCTCCgg                                        >  2:423968/1‑143 (MQ=255)
                                                                                                 cGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                                       <  2:533564/143‑1 (MQ=25)
                                                                                                 cGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCCGc                                       >  2:556610/1‑143 (MQ=255)
                                                                                                  gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                      >  1:342445/1‑143 (MQ=255)
                                                                                                  gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGACCAATTTATTGAATTTACACAATTTTGTCGGCCGGATACGTCGTTCCCGCCCCCTCCGGcc                                      >  1:310267/1‑142 (MQ=21)
                                                                                                                         aTTTATGACAAACGCAACACGGCCTCATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAAGTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAAc               <  2:394028/143‑1 (MQ=255)
                                                                                                                             aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTc           <  2:556630/143‑1 (MQ=255)
                                                                                                                               gACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTa         <  2:675012/143‑1 (MQ=255)
                                                                                                                                aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAg        <  1:44366/143‑1 (MQ=255)
                                                                                                                                  aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAATAGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAATAAGCGCACTTCGTCAACAGTCTAGcc      >  2:4560/1‑143 (MQ=255)
                                                                                                                                      gCAAACCTGCCTGACGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAt  <  1:83457/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                       
TACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAT  >  NC_000913/2291059‑2291335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.