New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 225998NA (NA)6 (0.080) 5/274 10.2 NA noncoding (240/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 226015 NA (NA)noncoding (257/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225853‑225998
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCG  <  NC_000913/226015‑225874
                                                                                                                                                                                                                                                                                                
ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAGACGAAATCAACCGAGTTTCC                                                                                                                                                   >  1:863259/1‑143
ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCGACCGAGATTCC                                                                                                                                                   >  1:1016981/1‑143
ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCC                                                                                                                                                   >  1:933558/1‑143
ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCC                                                                                                                                                   >  1:692984/1‑143
ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCC                                                                                                                                                   >  1:568556/1‑143
 CCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCC                                                                                                                                                  <  1:62483/143‑1
 CCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCC                                                                                                                                                  >  2:1199974/1‑143
 CCGGTATAACCGGCGACTTACGATGGGGGAATCGCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCC                                                                                                                                                  <  2:7072/143‑1
  cttgagAACCGGCGCTGTCCGACGGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATGGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCC                                                                                                                                                 <  1:468664/137‑1
  CGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCC                                                                                                                                                 <  1:585248/143‑1
  CGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCC                                                                                                                                                 <  2:280846/143‑1
  CGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCC                                                                                                                                                 >  2:1105942/1‑143
  CGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATAAACTGAATCCATAGGTTAGTGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAAAACTCAAACGGGATGCCCg                                                                                                                                                 >  2:979182/1‑142
  CGTTATAAACGGAGATCTCCGAATGGGGAAACCCAGTGTGTGTCGACACACTATCATTAACTGAATCCAGAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCC                                                                                                                                                 <  2:1054767/143‑1
  CGTGATAACCGTCTATTCCCGAGTGCCGACACCCAGTGTCTTTCGACACACTATCATTAACTGACTCCATACGTTAATGAGGCGAACCGGGGGAACTGAAACACCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCC                                                                                                                                                 <  2:904978/143‑1
   GTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCC                                                                                                                                                <  2:550966/143‑1
           CGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAACCATCTAAGCTACCCGAGGAAAAGAAAACCACCGAGATTCACCCGgctgcgg                                                                                                                                        >  1:1096055/1‑136
                                 CCCCGTGCGTTTCGACACACTATCATTACCTGCATCCATAGGTTCGTGAGGCGAACCGGGGGAACTGCAACATCTAAGCACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGG                                                                                                                  <  2:349458/143‑1
                                                       tgATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTA                                                                                            <  2:920072/141‑1
                                                                                                                                        gcttcaCCCCGTGCGGTCGCCGCGACTGGCGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTTGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTT           <  2:383568/137‑1
                                                                                                                                          tgcCCCCCGTTCGCTCGCCGCTGCTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCC         <  2:547307/140‑1
                                                                                                                                          tgcCCCCCGTTCGCGCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCC         <  2:892671/140‑1
                                                                                                                                            cttCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAGCCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTATCCCC       >  2:1265517/4‑143
                                                                                                                                            cCCCCCGTTCCGCCGCCGCTGCCGCGGGCATCTCGGTTGTTTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTGCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTCTCGAAACACACTGGGTTTCCCC       <  2:458199/142‑1
                                                                                                                                             gCCCCGTTCGCTCGCCGCTACTGTGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCA      <  2:472427/142‑1
                                                                                                                                              CCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCTGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACCGGGTTTCCCCAT     >  2:66694/1‑143
                                                                                                                                              CCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGCGCCAGTTACTGATAGTGTGTCGAAACACACGGGGTTTCCCCAc     >  1:693663/1‑142
                                                                                                                                              CCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATCTCTTTTCCTCGCGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGCATTCCGTTAATGACACTGTGCCGACACACACTGGGATTCCCCca     >  2:519252/1‑141
                                                                                                                                               cgCGTTCCGTCGCTGCTACTGGGGGAGTCGCGGTGGTTTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTACCCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATT    <  2:329918/141‑1
                                                                                                                                               CCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCtctt    >  2:948089/1‑139
                                                                                                                                               CCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTGAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCCATGGATCCAGTTAATGATAGTGCGCCGAAACACACTCGGCTTCCCCcct    >  2:1232856/1‑140
                                                                                                                                               CCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACGTAGATGGTTCAGTTCCCCCGGTTCGCCTCATTAACCAATGGATTCAGTTAATGATCGTGTGTAGAAACACACTGGGACTCCCCATT    >  2:635044/1‑143
                                                                                                                                               CCCGTTCGCTCGCCGCTACTGGGGGAATCTAGGTTGATTTCTTTTCCTCGGGGTACTTCGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGCTTCAGTTAATTATAGTGTGTCTAAACACACTGGGATTCCgcgtt    >  1:228064/1‑138
                                                                                                                                               CCCGTTCGCTCGCCGCTACTGGGGGAATCTAGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTGCTCCATg    >  1:681939/1‑142
                                                                                                                                               CCCGTTCGCGCGCCGCTCCTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATT    <  1:21241/143‑1
                                                                                                                                                CCGTTCTCCCGCCGCTTCTGGGGGAATCTCGGTTGATCTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTC   <  2:931954/143‑1
                                                                                                                                                CCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAACCACACTGGGTTTCCCCATTC   >  2:1021079/1‑143
                                                                                                                                                CCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTC   <  1:711337/143‑1
                                                                                                                                                CCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCAAAACACACTGGCACTCCCCATTC   >  1:534747/1‑143
                                                                                                                                                 CGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCG  >  1:526653/1‑143
                                                                                                                                                 CGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCG  <  1:639002/143‑1
                                                                                                                                                 CGTGCGCTCGCCGCTACTGCGTGTATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCG  <  2:513600/143‑1
                                                                                                                                                                                                                                                                                                
ACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/225853‑225998
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCG  <  NC_000913/226015‑225874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.