Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979268 1979278 11–776 74 [0] [1] 76 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)69 (1.000) 52/266 0.2 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979141‑1979421
                                                                                                                                          |                                                                                                                                              
ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctacgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                            <  2:369199‑M2/5‑1 (MQ=255)
ctgtacacttatctaagatgtttcctaaaccgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                            <  1:782856‑M2/5‑1 (MQ=255)
 tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTAAAAg                                                                                                                                           >  2:778033‑M2/138‑143 (MQ=255)
    acacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggcggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                        >  1:1269706‑M2/135‑143 (MQ=255)
    acacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttaacaaggccagggtgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                        >  1:606547‑M2/135‑143 (MQ=255)
      acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                      >  1:1118452‑M2/133‑143 (MQ=255)
              aagatttttcctaaatcgacgcaactgtgctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                              >  1:874072‑M2/125‑143 (MQ=255)
                 attttttctatatcgacgtacatttactcgttactacacgcacatacaacggaggggggctgctattttcaataatgcgtgatgcagatcacacaatacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                                                           <  2:319001‑M2/22‑1 (MQ=255)
                  ttgctccgaaatcgacgtgactgtacgcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                          <  2:924814‑M2/23‑1 (MQ=255)
                        ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacgctcaattacttaacataaatgTATAAGTCATACCTTTGTGTTGGGTGTAt                                                                                                                    >  1:609930‑M2/115‑143 (MQ=255)
                        ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgactttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTAt                                                                                                                    >  2:112204‑M2/115‑143 (MQ=255)
                         taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgcttttcaatactgagtgatgcagaccacacaaaacactcaattacttaacatacctgTATACGTCATACTATTGCTCTGGGTGTAtt                                                                                                                   >  2:302010‑M2/114‑143 (MQ=255)
                         taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                   >  2:116027‑M2/114‑143 (MQ=255)
                         taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTAGTTTTGGATGTAtt                                                                                                                   >  2:22034‑M2/114‑143 (MQ=255)
                          aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                  <  2:61579‑M2/31‑1 (MQ=255)
                            atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcgcacaaaacacccaattacttaacataaatgTATAAGTCATACGTTTGTTTTGGGTGTATTTCa                                                                                                                >  2:193200‑M2/111‑143 (MQ=255)
                              cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaataTATAAGTCATACTTTTGTATTGGGTGTATATCAAt                                                                                                              >  2:410136‑M2/109‑143 (MQ=255)
                              cgacgcaacggtactcgtctctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                              <  2:1272329‑M2/35‑1 (MQ=255)
                               gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                                                             >  2:726242‑M2/108‑143 (MQ=255)
                                acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatccagatcacacaaaacactcaattacttaacataaatgTATAAGTCAAACTTTTGTTTTTGTTGTATATAAATCt                                                                                                            >  2:33321‑M2/107‑143 (MQ=255)
                                      ctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                      <  1:6077‑M2/43‑1 (MQ=255)
                                       tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                     >  1:346078‑M2/100‑143 (MQ=255)
                                        gtactcgtctctacacgcacgtacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacaaaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                    <  2:1261094‑M2/45‑1 (MQ=255)
                                         tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                    >  1:1210928‑M2/98‑142 (MQ=255)
                                         tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                    <  2:1210928‑M2/45‑1 (MQ=255)
                                         tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTCTTAAAAAg                                                                                                   >  2:500654‑M2/98‑143 (MQ=255)
                                         tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTTTTTGGGTGTATTTCCATCTGTTAAAAAGt                                                                                                  >  1:759304‑M2/98‑143 (MQ=255)
                                            tcgtcagtacacgcacttacaacggaggtgcgctgcgattttcaataatgcgtgatgcagatcacacaaaactctcaattacttaacttaaacgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTGAAAAAGttt                                                                                                <  2:371520‑M2/49‑1 (MQ=255)
                                            tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGAATTTCAATCTGTTAAAAAGttt                                                                                                >  1:448446‑M2/95‑143 (MQ=255)
                                              gtcactacacgcacctgcaacggaggcgggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattactgaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                              <  2:520701‑M2/51‑1 (MQ=255)
                                                  ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                          >  1:477862‑M2/89‑143 (MQ=255)
                                                        gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                    >  2:114463‑M2/83‑143 (MQ=255)
                                                          acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTGTTCGCTTCGCTagc                                                                                  >  2:852493‑M2/81‑143 (MQ=255)
                                                             tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                                                               <  2:247179‑M2/66‑1 (MQ=255)
                                                               caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                                                             >  1:263929‑M2/76‑143 (MQ=255)
                                                                   ggaggtgcgcttcgattttcaataatgcgtgatgcatatcacataaagcactcaattacttaacataaatgTATAAGTCATACTTTTGTCTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                         <  2:520324‑M2/72‑1 (MQ=255)
                                                                   ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                         <  1:1047981‑M2/72‑1 (MQ=255)
                                                                   ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                         <  1:25332‑M2/72‑1 (MQ=255)
                                                                   ggaggggggctgcacttttcaacaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGCGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                         <  2:621368‑M2/72‑1 (MQ=255)
                                                                    gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgGATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                        <  1:138081‑M2/73‑1 (MQ=255)
                                                                        ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                    <  1:1293057‑M2/77‑1 (MQ=255)
                                                                          ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                                  <  1:1215019‑M2/79‑1 (MQ=255)
                                                                           gctgcgattttcaataatgcgtcatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                                 <  1:980149‑M2/80‑1 (MQ=255)
                                                                            ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGTTTTTCGCTACGCTAGCAAGCCAAAATGAAATAgg                                                                >  2:263353‑M2/63‑143 (MQ=255)
                                                                                   tttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACCGTTTATGTGCACGCGAGCAAGCAAAAATGAAACAGGAATAATc                                                         >  2:271345‑M2/56‑143 (MQ=255)
                                                                                     tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGCTTCTGTCGACGCGAGCAAGCAAAAATGAAACAGGAATAATCGa                                                       >  2:272223‑M2/54‑143 (MQ=255)
                                                                                         taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGACTCATCGAAATg                                                   >  1:326789‑M2/50‑143 (MQ=255)
                                                                                         taaggcgttatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTGTGTTTTGGGTGTATTTCAATCTGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                                   <  1:39227‑M2/94‑1 (MQ=255)
                                                                                          aatgcgtcatgcagatcacgtagaacactcaagtacttaacgtaaatgTATAAGTCATACTTTTGTTTTGGGTGTGTTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                  <  2:661478‑M2/95‑1 (MQ=255)
                                                                                                  atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                          >  1:976131‑M2/41‑143 (MQ=255)
                                                                                                    gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCTCTACGCTAGCAAGCAATCATGAAACAGGAATCATCGAAATGGGATACTgcgc                                        >  2:1020145‑M2/39‑143 (MQ=255)
                                                                                                    gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgc                                        >  2:882346‑M2/39‑143 (MQ=255)
                                                                                                      agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                      >  2:502281‑M2/37‑143 (MQ=255)
                                                                                                       gattacacaaaagactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGGGGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                     <  2:554637‑M2/108‑1 (MQ=255)
                                                                                                       gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                     <  1:778033‑M2/108‑1 (MQ=255)
                                                                                                       gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                     <  2:706081‑M2/108‑1 (MQ=255)
                                                                                                         tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                   <  1:344713‑M2/110‑1 (MQ=255)
                                                                                                          cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                                  <  1:922488‑M2/111‑1 (MQ=255)
                                                                                                             acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                               >  1:1201659‑M2/30‑143 (MQ=255)
                                                                                                               aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCAAAGTCAAAAt                             >  1:976328‑M2/28‑143 (MQ=255)
                                                                                                                aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                            >  1:726642‑M2/27‑143 (MQ=255)
                                                                                                                        aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                    >  2:862537‑M2/19‑143 (MQ=255)
                                                                                                                          ttacgtaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAGTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGCAAAAATGAACCAAGAATGATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTa                  <  2:1076361‑M2/127‑1 (MQ=255)
                                                                                                                           tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAACAGTTCTTCGCTACGCTAGCATGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa                 >  1:971041‑M2/16‑143 (MQ=255)
                                                                                                                           tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCCAAATAACTCACCGTaa                 >  1:763756‑M2/16‑143 (MQ=255)
                                                                                                                             cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCTAAATGGGATGTTGCGCACAGTCAAAATAACTCACCATAaat               >  1:590472‑M2/14‑143 (MQ=255)
                                                                                                                             cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaat               >  1:1215701‑M2/14‑143 (MQ=255)
                                                                                                                              ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                        >  2:176850‑M2/13‑85 (MQ=255)
                                                                                                                              ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                        <  1:176850‑M2/73‑1 (MQ=255)
                                                                                                                                   ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGAAACAAACAACAAGTGAGAAGCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAACTAatcat         >  1:609107‑M2/8‑143 (MQ=255)
                                                                                                                                      aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg      >  2:849203‑M2/5‑143 (MQ=255)
                                                                                                                                      aaTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGAAAGCAAGCAAGAAACAGGTTTAAGGCAGACGGTATGTTGCGCACAGTCGACATAACTCCCCGTAAATAATCATCTg      >  2:277707/1‑143 (MQ=255)
                                                                                                                                         gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTATCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTa   >  1:1266816‑M2/2‑143 (MQ=255)
                                                                                                                                         gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCCTAAACAAGCATCCGct  >  1:155765‑M2/2‑142 (MQ=255)
                                                                                                                                         gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAAAGGAATAATCGAAATGGGATGTTGCGGACAGACAAAATAACTCGCGGTAAGTAATCATATGGTa   >  1:742535‑M2/2‑143 (MQ=255)
                                                                                                                                          tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat  >  1:660018/1‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                              
GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979141‑1979421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.