New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1097007 =	72 (0.990)	6 (0.080)	6/276	9.6	9.6%	intergenic (+178/+558)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	1097534 =	42 (0.590)					intergenic (+705/+31)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGG  >  NC_000913/1097445‑1097676                                                                                          |                                                                                                                                               gaCGGTGTTTCCACCTGGCTGCCGCCAGTTGTCTATCCCCGGTCGTGGCACCTCATCCCCCCGGAGCTTGCAAGATTAAAACAAAAAGCCCGTACTCGCGTACGTGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                           <  2:181953/142‑1 (MQ=2)  aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAc                                                                                          >  1:527195/1‑143 (MQ=33)     cgcgacacAACGGGCCGCCGCCAGTTGTCGAGCCGCGGTCGGGGCTCCGCCTCCCCCCGATTTGTGCAACATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc                                                                                       <  2:265933/136‑1 (MQ=11)        tGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAGAGGGGGGGATTCGAACGCCCGa                                                                                    >  1:775678/1‑143 (MQ=25)            cAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg                                                                                >  2:755326/1‑143 (MQ=255)             aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGACTCGAACCCCCGGTAAGt                                                                               >  2:752499/1‑143 (MQ=255)                 ggCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc                                                                           <  1:1124645/143‑1 (MQ=255)                  gCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCg                                                                          <  2:832480/143‑1 (MQ=255)                      tCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata                                                                      <  2:1012905/143‑1 (MQ=255)                        gCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATaca                                                                    >  2:1280656/1‑143 (MQ=255)                              tgccGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACttt                                                              <  1:471536/140‑1 (MQ=255)                                tCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTCAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATCCGTTGCCGTATACACCCTTTcc                                                            >  2:648751/1‑143 (MQ=255)                                tCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCACGTACATGCGTAAGAGCGCTGCTTTCAATATGGCGGTGAGGGGGGGATTCGAACACCCGACACGTTGCCGTATGCACACTGTcc                                                            >  2:396056/1‑143 (MQ=17)                                 cGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCa                                                           >  1:566657/1‑143 (MQ=255)                                   aaCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg                                                                                     >  2:1302625/1‑115 (MQ=40)                                   aaCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg                                                                                     <  1:1302625/115‑1 (MQ=40)                                      cccGGTCGGGACTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACCCTTTCCAGGCGt                                                      >  2:594103/1‑143 (MQ=255)                                       ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTg                                                     <  1:429085/143‑1 (MQ=255)                                        cGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGGCGGATACAGACGTTGCAGGCGTGc                                                    >  1:1140637/1‑143 (MQ=17)                                        cGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCCTATCCACACTTTCCCGGCGTGc                                                    >  2:1033464/1‑143 (MQ=255)                                         ggTCCGGCCTCCTCCTCCCCCTAGTGCGTGTAATACACGAATAAAAAGCCCGTCCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCt                                                   <  2:498327/143‑1 (MQ=14)                                            cGGGTCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCt                                                <  1:633607/143‑1 (MQ=255)                                              gggCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGCCCTGCTCCtcc                                              >  1:557097/1‑141 (MQ=255)                                               ggCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTcac                                                                                            >  1:975218/1‑94 (MQ=14)                                               ggCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                                                                                            <  2:975218/96‑1 (MQ=33)                                                   tctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATGCACACTTTCCAAGCGACCTGCTTCAGcga                                         >  2:612211/1‑141 (MQ=18)                                                    ctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTcac                                                                                            >  1:849097/1‑89 (MQ=14)                                                    ctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGa                                                                                            <  2:849097/91‑1 (MQ=33)                                                    ctcATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCAc                                        <  1:839175/143‑1 (MQ=255)                                                      taTCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                      <  1:113811/142‑1 (MQ=255)                                                      cctCCCCCCGGCGTGTCCCATCCACGAAAAAAACGCCCGTACTTTCGTACGAGCTCCTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                      <  2:344618/141‑1 (MQ=14)                                                      cacccccccGGTGTGTGATATCTCCGAAATACACGCCCGTACGTTCGTCCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                      <  2:1234999/140‑1 (MQ=14)                                                          cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTCCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCCTATACACCCTTTCCAGGCGTGCTCCTTCACCCAACCGGac                                  >  2:1102978/1‑143 (MQ=17)                                                          cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                           <  1:630378/86‑1 (MQ=35)                                                          cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                           >  2:630378/1‑86 (MQ=35)                                                                             aCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGtt               >  1:228458/1‑143 (MQ=40)                                                                              cGAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTc              <  1:393156/143‑1 (MQ=255)                                                                               gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGAGACCTCACCAAATTGTCGTTcc             >  1:841258/1‑143 (MQ=255)                                                                               gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACCCGGACACCCCACCAAATTGTCGTTcc             >  2:945438/1‑143 (MQ=255)                                                                               gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTACGCCACCCGGACACCTCACCCAATTGTCGCTcc             >  2:925268/1‑143 (MQ=14)                                                                               gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCCCCTTCCGCCCCTCGGACACCTCACCAAATCATCGTTcc             >  1:1133705/1‑143 (MQ=14)                                                                                aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCGTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCt            >  1:1123280/1‑143 (MQ=255)                                                                                         cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTg   >  2:558803/1‑143 (MQ=255)                                                                                          ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTgg  >  1:35865/1‑143 (MQ=255)                                                                                          ccGTACGTTCGTACGAGCGCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTgg  <  1:80774/143‑1 (MQ=255)                                                                                          |                                                                                                                                               CACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGG  >  NC_000913/1097445‑1097676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.