Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT39.1% 59.2 / 71.7 93intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base C (31/25);  new base T (19/17);  total (51/42)
Fisher's exact test for biased strand distribution p-value = 8.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01
Rejected as consensus: Frequency below/above cutoff threshold.

AAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC  >  NC_000913/4295919‑4296202
                                                                                                                                             |                                                                                                                                              
aaGGCGTTTATGCCGCAGCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAGTTAGCGTGATTTTGTAGGTCGGATAAGCCGTTTACGCCGCATCCGGCATCAACg                                                                                                                                               >  2:167308/1‑143 (MQ=255)
 aGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGCCGGATAATGCGTTTACGCCGCATCCGACATCAACGc                                                                                                                                              <  1:906254/143‑1 (MQ=17)
  ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAAGAGCCTGATTTAGCGTGATTTTGACGTTCTGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                                                                             >  2:1063103/1‑143 (MQ=11)
   gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGACTTTGTCGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt                                                                                                                                            >  2:185304/1‑143 (MQ=255)
     gTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCGAGACTGCGCGATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCATCAACGCCTGa                                                                                                                                          >  1:829331/1‑143 (MQ=255)
     gTTTATGCCGCATCCGACATCAAAGCATGATGCGACCCTTAACGCGTCTTATCAGGCCTACGCCAGACACAGCACTAGGCTGGATTCACGTGATTTATTACGTCCCAGAAGGCGATTACGCCGCACCCGACCGCAACGCCTgc                                                                                                                                          >  2:273829/1‑142 (MQ=2)
        tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                                                                                       <  2:582710/143‑1 (MQ=17)
          tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa                                                                                                                                     <  1:978383/143‑1 (MQ=17)
          tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa                                                                                                                                     <  1:61228/143‑1 (MQ=17)
          tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa                                                                                                                                     <  2:76156/143‑1 (MQ=17)
          tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa                                                                                                                                     <  1:225226/143‑1 (MQ=17)
          tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa                                                                                                                                     >  1:76156/1‑143 (MQ=32)
             cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGCCGGATAAGGCGTCTACGCCGCATCCGACATCAATGCCTGATGCGgcgc                                                                                                                                  >  2:520789/1‑143 (MQ=255)
              gCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGataga                                                                                                                                 >  1:1199653/1‑139 (MQ=17)
              gCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCGGAGTTAGCGGGATTTTGTAGGTCGGGTAAGGCGCTTACGCCGCATCCGACATCAATGCCTGATGCgttaga                                                                                                                                 >  1:185604/1‑138 (MQ=11)
                 tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                                                                              <  1:6120/143‑1 (MQ=21)
                 tCCGACATCAACGACTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc                                                                                                                              <  1:45515/143‑1 (MQ=21)
                  ctgACATCATCGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc                                                                                                                             <  2:199691/141‑1 (MQ=255)
                  ccGACATCAACGCCTGATGCGACGCTTAGCGCGTCTTTTGGGGCCTACCCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                                                                             <  1:1304141/143‑1 (MQ=11)
                   cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACGTCAATGCCTGATGCGACGCTTGCcg                                                                                                                            <  1:1049002/143‑1 (MQ=25)
                    gccATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc                                                                                                                           <  1:951582/141‑1 (MQ=37)
                    gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGc                                                                                                                                  <  1:786648/136‑1 (MQ=18)
                    gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGTcgc                                                                                                                           >  2:1313242/1‑143 (MQ=18)
                    gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc                                                                                                                           >  2:767841/1‑143 (MQ=25)
                    gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc                                                                                                                                  >  2:786648/1‑136 (MQ=32)
                    gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc                                                                                                                           <  1:1008636/143‑1 (MQ=37)
                     aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCCATGCGTGATCCGACGCTTGCcgcg                                                                                                                          >  1:1074957/1‑143 (MQ=255)
                     aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg                                                                                                                          >  1:111667/1‑143 (MQ=25)
                     aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg                                                                                                                          >  1:977385/1‑143 (MQ=25)
                         caccGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTTTGCTAAACAGCGCAATAGCCTAATTTATCGTGATTTTGTAGGTCGGATAATGCGTTTACGCCGCATCCGTCATCAACGCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                      <  1:179774/140‑1 (MQ=14)
                         cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                      >  2:494407/1‑143 (MQ=25)
                          aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACTGCCTGATGCTACGCTTGCCGCGTCTTa                                                                                                                     >  2:7540/1‑143 (MQ=255)
                          aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCGTGATGCGACTCTTGACGCGGCTTa                                                                                                                     >  2:660830/1‑143 (MQ=11)
                          aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa                                                                                                                     >  1:459197/1‑143 (MQ=38)
                           aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAACGCAAATTTGTAGGAAGGATAAGGCATTTACGCCGCATCCGACATCAATGCCTGATGCCACGCTTGCTGCGTCTCAt                                                                                                                    >  1:979483/1‑143 (MQ=11)
                             gCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                                  <  1:456294/143‑1 (MQ=255)
                                tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACTGCCTGATGCGACGCGTGCCGCGTCTTCTCACGc                                                                                                               >  2:26362/1‑143 (MQ=11)
                                 gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCGATGCCTGATGCGACGCTTGCCGCGTCTTAGCAGGcc                                                                                                              >  2:464150/1‑143 (MQ=255)
                                   tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCCACGCTTGCCGCGTCTTGTCAGGCCtc                                                                                                            >  2:677963/1‑142 (MQ=255)
                                       aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc                                                                                                        >  1:1177329/1‑143 (MQ=38)
                                         gCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCAGACATCACAGCCTGATGCGACGCTTGACGCCTCTCATCATGCCTagcgcac                                                                                                      >  2:67238/1‑137 (MQ=11)
                                              aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTTATTTTGTAGTTTTGTTAATGCTTTTTCGTTGCATCCTACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc                                                                                                 <  1:50656/143‑1 (MQ=11)
                                              aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc                                                                                                 <  1:703228/143‑1 (MQ=39)
                                               ggcgccgtATCACGCCCACGCGAGCCGGAGCAATGGCCTGACTGCGCGTGAATTTGTGAGGAGGGCAGGGCGTTTACGCCGCGTCAGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg                                                                                                <  2:252303/136‑1 (MQ=9)
                                               cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg                                                                                                <  1:928041/143‑1 (MQ=39)
                                                 cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc                                                                                                                           >  1:117318/1‑114 (MQ=39)
                                                 cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCCCAGCCAgcgct                                                                                              >  2:424457/1‑142 (MQ=255)
                                                   tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt                                                                                            <  1:158787/143‑1 (MQ=39)
                                                     ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc                                                                                                                                       <  2:830321/98‑1 (MQ=21)
                                                     ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc                                                                                                                                       >  1:830321/1‑98 (MQ=34)
                                                       aTCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACCGCCTGATGCGACGCTTGCCGCGTCGTATCAGGCCTCCGCCAGCCCGCGCCATCGcc                                                                                        >  1:1288586/1‑143 (MQ=11)
                                                        tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt                                                                                                                                <  1:58055/102‑1 (MQ=18)
                                                        tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg                                                                                                                                               >  1:678932/1‑87 (MQ=35)
                                                        tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                                                                                                >  2:58055/1‑102 (MQ=32)
                                                         cAGGCGTCCGCCAGACAGCGCACTCGCCTGCTCTAGCGGGCTTTTGTCGGTCGGATAAGGCGGTTACCCCGCGCCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg                                                                                      <  2:1087270/143‑1 (MQ=14)
                                                            gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCGTCGCTATATCCTGaat                                                                                   >  2:403591/1‑141 (MQ=14)
                                                              cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                                                             <  2:103186/115‑1 (MQ=37)
                                                              cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                                                             >  1:103186/1‑115 (MQ=255)
                                                                 cGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTTTGTAGGTCGGACAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg                                                                              <  1:133007/143‑1 (MQ=255)
                                                                    cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt                                                                                                                         >  2:866905/1‑97 (MQ=255)
                                                                    cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt                                                                                                                         <  1:866905/97‑1 (MQ=255)
                                                                     aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                                                                         <  1:255509/80‑1 (MQ=25)
                                                                     aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                                                                         >  2:255509/1‑80 (MQ=21)
                                                                       aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCATTAGCCTGATTAAGCGTGAttt                                                                        >  1:702680/1‑143 (MQ=255)
                                                                       aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt                                                                        <  1:1072249/143‑1 (MQ=38)
                                                                          gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt                                                                     <  1:746878/143‑1 (MQ=39)
                                                                          gagctaTAGCCTGACTGCGGGTCATTTTGTCGACCGGATCGGGCGTATCCGCCCCACCAGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt                                                                     <  2:1020742/138‑1 (MQ=11)
                                                                           cgcAATAGCCTGCTTTGGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCTAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa                                                                    <  1:852648/143‑1 (MQ=255)
                                                                           cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                                                                                                <  2:561506/83‑1 (MQ=35)
                                                                            gcAATAGCCTGATTGAGCGTGAATTCGTAGGGCGGATAAGGCGTTTACCCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAg                                                                   <  1:178814/143‑1 (MQ=14)
                                                                                      cgtttAGGATGAATTGGTAGGTCCGATAGGGCGTTTACGCCGCGTCCGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                         <  2:139839/141‑1 (MQ=14)
                                                                                             cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                    <  1:381682/77‑1 (MQ=255)
                                                                                             cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                    >  2:381682/1‑77 (MQ=255)
                                                                                                 aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt                                                                                                                                <  1:1267772/61‑1 (MQ=255)
                                                                                                 aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                                                                                                >  2:1267772/1‑61 (MQ=37)
                                                                                                 aTTTAGTGGGGCGGATAGGGGGTATCCGCCGGAGCCGACGTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc                                              <  2:363783/143‑1 (MQ=11)
                                                                                                  ggttGTCGGTCGGCTGAGGCGTCTACGCCGCATCCGACATCCTCGCCCGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCGTGAGGCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                             <  2:1288586/141‑1 (MQ=11)
                                                                                                   tttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGCTAAGGCGTTTATGCCGc                                            >  1:1298330/1‑143 (MQ=255)
                                                                                                          gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCCGACAGCGCAATAGCCTCACTTATCGTGAGTTTGTCGGTCGGACAAGGCCGTTATGCCGCCTctgca                                     >  2:246317/1‑139 (MQ=11)
                                                                                                          gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGGTTTAGCGTGATTTTGTAGGTCGGATAAGGCGGTTATGCCGCATCCGAc                                     >  1:775940/1‑143 (MQ=255)
                                                                                                           tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGCTTTAGCGTGACCTCGTAGGTCGCATAATGCCTTGATGCCGCATCCgcaa                                    >  2:541540/1‑140 (MQ=14)
                                                                                                              gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCa                                 >  1:1152474/1‑143 (MQ=39)
                                                                                                               aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTCaa                                >  1:319532/1‑143 (MQ=255)
                                                                                                                tcgcgCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc                               <  1:135598/139‑1 (MQ=255)
                                                                                                                  aGGCGTTTACGCCGCGTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGc                             <  1:1210825/143‑1 (MQ=38)
                                                                                                                    gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg                                                               >  2:1244251/1‑107 (MQ=255)
                                                                                                                    gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGACCTCGTAGGTCGGATGAGGCGCTTACGCGGCATCCGCCATCAACCCCt                           >  2:860752/1‑143 (MQ=11)
                                                                                                                      gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCTTGa                         <  2:1152474/143‑1 (MQ=255)
                                                                                                                        ttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTCTGTAGGTCGGATAAGACGTTTCCGCCGCGTCCGACATCAACGCCTAATg                       >  2:828564/1‑143 (MQ=11)
                                                                                                                            gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCGGACGGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAGACCAACGCCTGACGCGAc                   >  2:1241903/1‑143 (MQ=11)
                                                                                                                             ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTCGCGTGGTTTTCTTGGTCGGATCAGGCGTTTCTGCCGCATCCGACATCAATGCCTGATGCGACg                  >  1:94195/1‑143 (MQ=11)
                                                                                                                              cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATGAGGCCGACGCCAGACAGCGCGATAGTGTGAATCAGCGTGGTTGTGTAGGCCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATgagaacg                 >  2:61228/1‑140 (MQ=11)
                                                                                                                              cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCGTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGc                 >  2:225226/1‑143 (MQ=21)
                                                                                                                                             cGCCTGCTGCGACGCTGGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATTAACGCCTGATGCGACGCTTAACGCGTCTTATc  <  2:693756/143‑1 (MQ=2)
                                                                                                                                             |                                                                                                                                              
AAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATC  >  NC_000913/4295919‑4296202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: