New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078057 (0.130)35 (0.750) 32/252 0.5 91.9% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 0 (0.000)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209461‑1209740
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aTCAGGCAGTTTATTTGTCGGATAAGCCTTGGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                           >  2:697974‑M2/1‑142 (MQ=255)
     gcatgttatttgtccgATAAGCCGTCGCCAGTTCCGGGTATTCTTCAGCAGAAAGAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct                                                                                                                                      >  2:527345‑M2/6‑137 (MQ=255)
     gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACCGACCCGGGCCACCCACCGGGAACGCAGAGccttct                                                                                                                                      <  2:913093‑M2/143‑7 (MQ=255)
           tatttGTCGGATAAGCCTTTGCCAGTCCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                                >  2:520349‑M2/1‑131 (MQ=255)
                                  aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg                                                                                                         >  1:778741‑M2/1‑108 (MQ=255)
                                  aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg                                                                                                         >  2:210676‑M2/1‑108 (MQ=255)
                                    ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                       <  1:826759‑M2/143‑38 (MQ=255)
                                        ggggATTCTTCGGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt                                                                                                   >  1:722666‑M2/1‑102 (MQ=255)
                                              tcgtcAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc                                                                                             >  1:913093‑M2/1‑96 (MQ=255)
                                                   agcagAAACAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt                                                                                        >  1:249849‑M2/1‑91 (MQ=255)
                                                   agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacccaggtgttcgggagccgtttgcacagtcccctccgatt                                                                                        <  2:282418‑M2/143‑53 (MQ=255)
                                                    gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGAGGCTGAAGGCCACGGAACCGGGACACCAACAGGTGATGCAGAGccttctcacaaaccaaggtgttcgagagccggttgcacagtgccatccgattt                                                                                       <  2:690394‑M2/143‑54 (MQ=255)
                                                     cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCGGTTGGCGGAGTGGCTGCAGGCCACGGAACCGGGACACCACCCGGTAATGCCGAGccttctcccagacccaggttttcgagagccgtctgcacagtgccatccgcttcg                                                                                      <  2:164231‑M2/143‑55 (MQ=255)
                                                     aagaAAAAGCGGCACCAGTGCATGGCAGCCAGCCGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttg                                                                                      >  1:83195‑M2/2‑89 (MQ=255)
                                                       gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgat                                                                                    <  1:836556‑M2/143‑57 (MQ=255)
                                                          aaaGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGccttctccccaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatc                                                                                 >  2:614867‑M2/1‑84 (MQ=255)
                                                                 cACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac                                                                          >  1:923589‑M2/1‑77 (MQ=255)
                                                                    cattgcattgCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgga                                                                       >  1:419176‑M2/1‑74 (MQ=255)
                                                                    cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccgaacggg                                                                       <  1:1407‑M2/143‑70 (MQ=255)
                                                                           tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccaaacggattcttgc                                                                <  1:298679‑M2/143‑77 (MQ=255)
                                                                           gttcgtccagcctgttggCGGAGTGGCCGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttgtcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                >  1:545419‑M2/7‑67 (MQ=255)
                                                                             tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcgg                                                              >  1:72204‑M2/1‑65 (MQ=255)
                                                                                 ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctta                                                          <  1:922650‑M2/143‑83 (MQ=255)
                                                                                      cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgacaaacggattcttgcggcgtagcagc                                                     <  1:227263‑M2/143‑88 (MQ=255)
                                                                                              ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgcttggctatcgccaaccggcttcttgctgcttaacagcagcctgtg                                             <  1:157577‑M2/143‑96 (MQ=255)
                                                                                                      tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccataccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctgaacagcagcgcgcgaagtgcgg                                     >  1:885857‑M2/1‑40 (MQ=255)
                                                                                                          ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacactgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag                                 >  1:854569‑M2/1‑36 (MQ=255)
                                                                                                                     cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt                      >  1:591882‑M2/1‑25 (MQ=255)
                                                                                                                     cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgt                      <  1:366075‑M2/143‑119 (MQ=255)
                                                                                                                     cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                           >  2:512878‑M2/1‑25 (MQ=255)
                                                                                                                     cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                           <  1:512878‑M2/138‑114 (MQ=255)
                                                                                                                       ggACACCAACAGTTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc                    >  2:213018‑M2/1‑23 (MQ=255)
                                                                                                                       ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc                    <  1:231331‑M2/143‑121 (MQ=255)
                                                                                                                             cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgacgtgcggcaagtaactggtcgagccgcctc              <  1:170594‑M2/143‑127 (MQ=255)
                                                                                                                                cAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttc           <  2:88380‑M2/143‑130 (MQ=255)
                                                                                                                                cAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcgtaacagcagcgcgcgcagtgcagtaagtaactggtcgtgccgcccctta           <  2:88396‑M2/143‑130 (MQ=255)
                                                                                                                                   gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgcattctcgcggcttaacagcagcgcgcgcggtacggtaagggaccggccgtggcgccccgacacc        <  2:814567‑M2/143‑133 (MQ=255)
                                                                                                                                     aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtgtgcacagtgccatccgatttgatatcaccaaaaggattttttcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccag      >  1:599185‑M2/1‑9 (MQ=255)
                                                                                                                                         cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacaacagcgcgcgtagtgcggtaagtaactggtcgtgccgccccttctccaggctg  <  1:902709‑M2/143‑139 (MQ=255)
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ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209461‑1209740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.