mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.0% | 39.8 / 16.1 | 37 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 31 (0.810) | 5 (0.150) | 5/252 | 4.2 | 14.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 32 (0.940) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 193444 = | 32 (0.830) | 3 (0.080) | 3/264 | 5.4 | 9.1% | intergenic (+15/‑77) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | 193489 = | 30 (0.840) | intergenic (+60/‑32) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 354612 | 36 (0.940) | 3 (0.080) | 3/270 | 5.5 | 8.2% | noncoding (14/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 354646 | 33 (0.910) | noncoding (48/171 nt) | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 340004 | 40 (1.040) | 3 (0.080) | 3/270 | 5.5 | 7.3% | noncoding (248/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 340015 | 38 (1.040) | noncoding (259/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 225895 | NA (NA) | 3 (0.080) | 3/270 | 5.5 | NA | noncoding (137/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225899 | NA (NA) | noncoding (141/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 2371625 = | 37 (0.960) | 3 (0.080) | 3/276 | 5.6 | 7.8% | coding (718/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| ? | NC_000913 | 2371665 = | 35 (0.940) | coding (758/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 3 (0.080) | 3/274 | 5.6 | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3263490 | 56 (1.460) | 3 (0.080) | 3/280 | 5.7 | 5.1% | coding (171/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
| ? | NC_000913 | = 3263511 | 56 (1.480) | coding (150/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_000913 | 1097426 = | NA (NA) | 3 (0.080) | 3/280 | 5.7 | 33.7% | intergenic (+597/+139) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097455 = | 6 (0.160) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 3 (0.080) | 3/280 | 5.7 | 37.8% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 5 (0.130) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||