New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1303239 =0 (0.000)30 (0.820) 24/284 0.5 100% coding (341/921 nt) oppB oligopeptide ABC transporter permease
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

CCAATGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1303378‑1303239
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG  <  NC_000913/1979270‑1979130
                                                                                                                                                                                                                                                                                         
cccatcCAAAACGAGCGCAAATATCATGACTAATAATGGTGCAACCACAAGACTGTGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGT                                                                                                                                            <  1:554629/137‑1
CCAATGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGT                                                                                                                                            >  1:362509/1‑143
    TGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATG                                                                                                                                        <  1:320824/143‑1
       AAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTG                                                                                                                                     >  1:434354/1‑143
       AAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTACCATTTGGTGTTTTGTTTTAATGCGGCAATCACGCCAGCACGGTGCTGCTG                                                                                                                                     >  1:536585/1‑143
         AATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGGATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCC                                                                                                                                   >  1:432023/1‑143
                 CAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACT                                                                                                                           <  1:380416/143‑1
                       gCATGACTCTTCATGGTGCAACCACACAACTGTGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATTCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTA                                                                                                                     <  2:608643/142‑1
                                          ccCCACAAACCTGGGGGTAACACCCCCGGTCATTGCCAGCCCCCTCACGGTATAGTCCCACTTGGTGTCTTGTGTTAATGCGGCAATAACATCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG                                                                                                  <  2:518631/141‑1
                                          cACCACAAAACTGGGGATAACACCCCCGGTCATTGCCAGCCCCATCCCGGTATAGTCCCATTTGGTGTTTTGTTTTAATCCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG                                                                                                  <  2:555431/142‑1
                                           ACCACAAAACTCGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                                                                 <  1:177316/143‑1
                                                               agCCCCGGTCATTGCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTGGTTTTAATGCGGTAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                                                            <  2:585304/141‑1
                                                               AACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTAAGAAGTGGGTTTTGAGGTGCTCCAGTGGCTTCTGT                                                                             >  2:652269/1‑143
                                                               AACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGATCTTAGATAATGGTTTTAGCGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGT                                                                             >  1:490624/1‑143
                                                               AACCCCGGGCATTGCCGGCCTCATCACGGTATAGTCCCATGTGGTGTTTTGTTTTAATGCGGCAATATCGCCAGCACGGTGTTGCTGCCAACTTACTGCTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGCGGCTTCTGT                                                                             <  2:66068/143‑1
                                                                cCCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCGATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                                                            <  2:663587/142‑1
                                                                  CCCGGGCATTGCCAGCCCCAGCGCGGTATAGTCCCGTTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTC                                                                          <  2:448524/143‑1
                                                                       tcgTTGCCTGCTGCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATGTAGTGTATGATGGTGTTTTTGAGGTGCTCTAGTGGCTTCTGTTTCTATCA                                                                     <  2:210284/140‑1
                                                                       gCATTGTCAGCCCCATGACGGTGTAGTCCCATTTGGTGTTTTGTTTTAATGCGGCGATAACGCCAGCACGGGGATGCTGCCAACTTACTGGTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA                                                                     <  2:244246/142‑1
                                                                       TCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA                                                                     <  1:116621/143‑1
                                                                          TTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGCGGTGCTCCGGTGGCTTCTGTTCCTATCAGCT                                                                  >  2:354986/1‑143
                                                                                             ATAGTCCTATTTGGTTGGTTGTTTTAATGCGGCAATAACGCCAGCATGGTGATGGTGCCAACTGACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC                                               <  2:218080/143‑1
                                                                                                    cagTTGCTGTTTTGTCTTAATGCGCCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGG                                        <  1:4478/140‑1
                                                                                                          tTGTTTTGTTTTAATGGGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATTGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTG                                  <  2:289361/142‑1
                                                                                                          GTGTTTTGTTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGCCTTCGGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTG                                  >  1:668694/1‑143
                                                                                                           TGTTTTGTGTTAATGCGGCGATAACGCCAGCGCGGTGATGCTGCGAACGTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGC                                 <  2:536585/143‑1
                                                                                                                  TTTTAATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACag                          >  2:635266/1‑141
                                                                                                                      AATGCGGCAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAA                      <  1:244109/143‑1
                                                                                                                             CAATAACGCCAGCACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCG               >  1:145856/1‑143
                                                                                                                                          ACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG  <  1:541688/143‑1
                                                                                                                                                                                                                                                                                         
CCAATGCAAAATGATCGCAAATATCATGACTAATAATGGTGCAACCACAAAACTGGGGATAACAACCCCGGTCATTGCCAGCCCCATCACGGTATAGTCCCATTTGGTGTTTTGTTTTAATGCGGCAATAACGCCAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1303378‑1303239
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCG  <  NC_000913/1979270‑1979130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.