New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	40 (1.090)	34/284	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1293039	0 (0.000)					intergenic (‑117/‑488)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

AGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGA  >  NC_000913/1292900‑1293178                                                                                                                                            |                                                                                                                                            aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCTAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                          <  1:263397‑M2/143‑4 (MQ=255)   aaTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCACTAGCCAGGAATGTAAGGAATTCACAATTGTTCTTTATTTTGTGCCGggtca                                                                                                                                        <  1:506609‑M2/143‑6 (MQ=255)   aaGTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaa                                                                                                                                        >  2:85150‑M2/1‑138 (MQ=255)               ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGGGGTTTGTTGAGGTATTATTTGAGCCCTAAATTATGTGCTGCTACAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtagtgactccaactt                                                                                                                            <  1:493952‑M2/143‑18 (MQ=255)                tCGCTCATTGTAGTAATCTCAAACTTATTTTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGTATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                           >  2:637934‑M2/1‑125 (MQ=255)                  gCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttgtt                                                                                                                         <  2:211362‑M2/143‑21 (MQ=255)                    tCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttcttga                                                                                                                       <  1:173148‑M2/143‑23 (MQ=255)                              aaTCTCAAACTTTTATTTGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCTGTTGTGCAATATCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttta                                                                                                             >  2:584920‑M2/1‑111 (MQ=255)                               aTCTCAAACTTAGATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttat                                                                                                            >  1:166383‑M2/1‑110 (MQ=255)                                 ctaAAATTTATATTGGGGTGGTTTGTTGAGGTAAGAATAGAGCGTTTGAGTCATCTGTGCAATAGCAAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgt                                                                                                          >  1:152383‑M2/1‑108 (MQ=255)                                  tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                         >  2:542001‑M2/1‑107 (MQ=255)                                           tatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCCGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgttaatgactccaacttattgatagtgttttatgttcagataatg                                                                                                <  2:550304‑M2/143‑46 (MQ=255)                                            atTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgc                                                                                               <  1:204166‑M2/143‑47 (MQ=255)                                                 ggtgttTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                          >  2:38293‑M2/1‑92 (MQ=255)                                                 ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCGTTCGTGAGGTATTTAAGAAATTCGATATGGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                          >  1:125931‑M2/1‑92 (MQ=255)                                                       ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATCAACAAGAAGATAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                    >  1:152341‑M2/1‑86 (MQ=255)                                                       ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCTAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                    >  2:251636‑M2/1‑86 (MQ=255)                                                         gttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGACCggccgacattccgtcttaccgatagtgttttatgttcagataatgcccgatgactttgt                                                                                  <  1:490839‑M2/143‑60 (MQ=255)                                                         gttgAGGTAATAATAGAGCCTTAAAGTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                  >  1:514168‑M2/1‑84 (MQ=255)                                                          ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttgttgatagtgttttatgctcagataatgcccgctggctttgcc                                                                                 <  1:259406‑M2/143‑61 (MQ=255)                                                          ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                                 <  1:41667‑M2/143‑61 (MQ=255)                                                                taataaTAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactctatcctgcag                                                                           <  2:669761‑M2/143‑67 (MQ=255)                                                                    catagAGCCTGAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTCTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc                                                                       >  1:54143‑M2/2‑73 (MQ=255)                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                              >  1:437388‑M2/1‑64 (MQ=255)                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                              <  2:333842‑M2/143‑80 (MQ=255)                                                                                     aGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgagtttgagaacga                                                      <  2:441662‑M2/143‑88 (MQ=255)                                                                                               tAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagatcatgcccgatgactttgtcatgctgctctcccgattttgagaacgacagagacttc                                            <  1:24634‑M2/143‑98 (MQ=255)                                                                                                aGCAAGGAATGTAAGGAATTCAAAAGTGTGCTTTAGTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc                                           >  1:571740‑M2/1‑45 (MQ=255)                                                                                                    aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc                                       <  1:218421‑M2/143‑103 (MQ=255)                                                                                                      gAATTTAATGAATTCTAATCTGTTCTTTGTTGTGTGCCTggtaatgtctccaagctgttgatggtgttttatgttcagataatgccctatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                                     >  2:192848‑M2/1‑39 (MQ=255)                                                                                                              ggAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                             <  2:278579‑M2/143‑113 (MQ=255)                                                                                                                aaGTCAAAGTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                           >  2:575445‑M2/1‑29 (MQ=255)                                                                                                                     aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccaggcgtgccaggtgct                      <  1:205003‑M2/143‑120 (MQ=255)                                                                                                                      aaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgtgaacgacagcgacttccgtcccagccctgccaggtgctg                     <  2:47858‑M2/143‑121 (MQ=255)                                                                                                                       aaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                    >  1:595464‑M2/1‑22 (MQ=255)                                                                                                                         ttGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct                  >  1:466646‑M2/1‑20 (MQ=255)                                                                                                                                    tttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgggtcaggttcaggt       <  1:251449‑M2/143‑135 (MQ=255)                                                                                                                                       gtgCCGggtaatgactcctacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttat    >  2:632759‑M2/1‑6 (MQ=255)                                                                                                                                        tgCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagatgctgactaagatgcaggttatg   <  2:527762‑M2/143‑139 (MQ=255)                                                                                                                                         gCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgaggactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggtcatgc  <  1:351377‑M2/143‑140 (MQ=255)                                                                                                                                            |                                                                                                                                            AGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGA  >  NC_000913/1292900‑1293178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.