New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780530 (0.820)7 (0.210) 7/252 3.1 19.3% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 32 (0.980)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC  >  NC_000913/1209465‑1209739
                                                                                                                                         |                                                                                                                                         
ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTtc                                                                                                                                      >  1:263546/1‑143 (MQ=255)
   catttcgttGTCGGATAAGCCTCCGCCCGGTCCGTGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTcc                                                                                                                                   <  2:412435/136‑1 (MQ=255)
     tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCa                                                                                                                                 >  2:24805/1‑143 (MQ=255)
       tatttGTCGGATAAGCCTGTGCCAGTTCCGTGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGGCCTCTCCCaaa                                                                                                                               <  2:173481/143‑1 (MQ=255)
         tttGTCGGATAAGCTTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAAcc                                                                                                                             <  1:172066/143‑1 (MQ=255)
               ggATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCCACAGTTAATGCAGAGCCTTCTCCCAAACCAACGtt                                                                                                                       <  1:463383/143‑1 (MQ=255)
                  gtaGCCTTTGCGCGTTCTGTGTATTCTTCAGTAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGGCCACGGAACCGGGACAGCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                    <  2:81348/141‑1 (MQ=255)
                      ccTTGGCCAGTTCCGGGGATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                                <  1:177662/143‑1 (MQ=255)
                       cTTTTCCAGTTCCGGGTATTCTTCAGTAGAAAATGCGTCACCATTGCATTTCAGTCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                               <  2:278627/143‑1 (MQ=255)
                        tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAACCCCACGTTtgtgcatgt                                                                                                              >  1:304891/1‑138 (MQ=255)
                             cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGCACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga                                                                                                         >  1:58952/1‑143 (MQ=255)
                                   cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                   >  1:52302/1‑143 (MQ=255)
                                   cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCAGTTCAGCCAGCCTGTTGACGGAGTGGCTGAAGGCCACGGAACCGGGACCCCAACAGGGAATGGAGAGCCTCCTCCCAAACCAACGAACATGAAACTGAAGAAGTAAc                                                                                                   >  2:283756/1‑143 (MQ=255)
                                     ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTGAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATGAAGAAATAACaa                                                                                                 >  2:301479/1‑143 (MQ=255)
                                                gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGGGCCTTCTCCCAAACCAACGTTTATGAAAATGCAGAAATAACACGCAAATGGcat                                                                                      >  1:43727/1‑143 (MQ=255)
                                                      aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATACAAAACATTCTACCAAACCAACATTTATGAAAATAAAGCAATAACAACCAAATGCCATCATTca                                                                                >  2:43902/1‑142 (MQ=255)
                                                                        ttCAGCCAGTCTGTTGGCTGGGTGGCGGAAGGCCTCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAGTCCTGCTTTTACCAGGGGGAt                                                              <  2:64077/143‑1 (MQ=255)
                                                                        ttCAGCCACCGTTTTAGTGGAGCGGCGGATGGCTACGGAACCGGGACACTAACAGGTAATGCAGAGCATTATCCCAAACCTACGCTTATGATATTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                              <  2:333680/143‑1 (MQ=255)
                                                                        tccagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                              <  1:662564/141‑1 (MQ=255)
                                                                               agccTGTTGGGGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCGACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt                                                       <  2:666553/143‑1 (MQ=255)
                                                                                gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                      >  1:436830/1‑143 (MQ=255)
                                                                                        gCGGAGTGTCCGAAGGACACGGAACCGGGACACCCACACGTAACCCCGCCCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCACATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                              <  1:644592/143‑1 (MQ=255)
                                                                                        gCGGAGTGGCTGAAGCCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                              <  2:26244/143‑1 (MQ=255)
                                                                                         cGGTGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                             <  1:518603/143‑1 (MQ=255)
                                                                                         cGGAGTGGCTGAAGGCCACGGAACCGGGACACCGACAGGTAATGCAGAGCCTTCTCCCAAACCGACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATGCCTGCTGTTACCAGGGGGATTTAACATGCTTATTGGc                                             <  1:288555/143‑1 (MQ=255)
                                                                                                gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                      >  1:135092/1‑143 (MQ=255)
                                                                                                  tgtaGGCCACGCACCCGGTACACCAACAGGTAATGCTGATCTTTCTCCCTAACCAACGTTTATGACAATGAAGAAATATCAAGCAAATGGGATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTAcgc                                    <  2:75261/140‑1 (MQ=255)
                                                                                                  tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                    <  2:135092/143‑1 (MQ=255)
                                                                                                      ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCGCCATTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt                                >  1:490537/1‑143 (MQ=255)
                                                                                                                 cGGGACACCAACAGGTAATGCAGAGCCTTGTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                     <  2:183742/143‑1 (MQ=255)
                                                                                                                          aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacacg            >  2:20142/1‑142 (MQ=255)
                                                                                                                              gttAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc        <  2:536873/141‑1 (MQ=255)
                                                                                                                               gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAGCAGGGGGa                                                               >  2:543158/1‑87 (MQ=255)
                                                                                                                               gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                               <  1:543158/87‑1 (MQ=255)
                                                                                                                                   tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGACCACAGATCTACac   >  1:391814/1‑142 (MQ=255)
                                                                                                                                   tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCGTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATGTGCaa   >  1:15165/1‑143 (MQ=255)
                                                                                                                                    gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATGGGCTAGGTACGCGTCTCCATAAATGACGAAAACACGGATGTACacc  >  2:136603/1‑141 (MQ=255)
                                                                                                                                         |                                                                                                                                         
GGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC  >  NC_000913/1209465‑1209739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.