New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2144164	42 (0.880)	4 (0.090)	3/264	7.2	9.2%	coding (899/3318 nt)	yegE	putative diguanylate cyclase
	?	NC_000913	= 2144173	40 (0.890)					coding (908/3318 nt)	yegE	putative diguanylate cyclase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCCCTCCCTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGAC  >  NC_000913/2144022‑2144298                                                                                                                                               |                                                                                                                                       gATCCCTCCCTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAg                                                                                                                                        <  1:883331/143‑1 (MQ=255)      ctccctGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGACTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGaaa                                                                                                                                   >  1:338228/1‑143 (MQ=255)          ctGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAAAGCAAACACATATCCGAAAGCGAAACCCa                                                                                                                               >  2:7072/1‑143 (MQ=255)               tgctACGCGGGGTATGTACCTGAAGAGTCATGTGCCGTGGTTGCTGTTTTCGCCAAACCAACAAACCATTAATTTTATTACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACTTTTCCGAAAGCGAAACCCACTTTc                                                                                                                          <  2:185529/143‑1 (MQ=255)                  tACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAGGCGAGACCCGCTTTCGGa                                                                                                                       >  1:18095/1‑143 (MQ=255)                   aggccgcGTGCGGACCGGCTGAGCCATATGCCGGGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACAGCATGACCATGGGGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGaa                                                                                                                      <  2:154169/141‑1 (MQ=255)                         cgtacgtaCCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGAt                                                                                                                <  1:3185/143‑1 (MQ=255)                            aggtacCTGACGAGCCCTATGCCGTGGCTCCCGTTTCTCCGTATTCTGCTGCCCGCCAACATCATGCCCATGGTGATGTATGCCTGTCGTGCGGAACGCACACACATTTCCGAAAGCGAAATCCACTTTCGGAACGCGATGGa                                                                                                             <  2:59311/141‑1 (MQ=255)                                 ccTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATAtt                                                                                                        <  1:593087/143‑1 (MQ=255)                                    gatgaGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCg                                                                                                     >  1:512817/1‑143 (MQ=255)                                             tatGCCGTCGATACCGTATTCACTTATCCTTTTGCCCGCCACCATCATCACAATATTGTTTTATGCCTCTCGCTTAGCACGCACACACATTTCCGAAAGCGAAATCCTGTTTCGGACCTCGATGTAATGTTCATCTAttgctt                                                                                            >  2:156430/1‑138 (MQ=255)                                                 ccGTGGCTACCGTTTTTGCTGATCCTGCTGCCTGCCAACATCATGACCATGGTGATGTATACCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACACACTTTCGGAACGCAGTGGCATATTCCGCTAACggactcgc                                                                                        >  2:358627/1‑137 (MQ=255)                                                   ggggCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTCTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGt                                                                                      <  1:440869/141‑1 (MQ=255)                                                        tACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACGCACTTTCGGAACGCGATGGAATATTCCGCTAGCGGTATGGCGGTAGTg                                                                                 >  1:130663/1‑143 (MQ=255)                                                                    tGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGa                                                                     <  1:366246/143‑1 (MQ=255)                                                                       tCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACaa                                                                  <  2:742755/143‑1 (MQ=255)                                                                       tCCTGCATCCCGCCAACACCCTGACCATGGGGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAATCCAAACCCACGTTCCGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACaa                                                                  <  1:104382/143‑1 (MQ=255)                                                                        ccTGCTGCCCGCCAACCTCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAAt                                                                 <  1:88898/143‑1 (MQ=255)                                                                         ctgctgCCCGCCAACATCATGACCATGGTGATGTATGGCTTTCGTGCGGAACGCAAACACATTGCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATg                                                                <  1:858611/143‑1 (MQ=255)                                                                              gcCCGCCAACTGCATGCCCCTCGGGACGCGTGCCTTTCGTACGGATCGCTAACTCATTTCCGAAAGCGAGACCCTCTTTCGGATCGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGc                                                           <  2:97792/143‑1 (MQ=255)                                                                              gcCCGCCAACGTCAGGACCGTGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGc                                                           <  1:300149/143‑1 (MQ=255)                                                                              gcCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCAATCGGTATGGCGTCAGTGGGCCCCGAGGGACAATGGCTGc                                                           >  2:619465/1‑143 (MQ=255)                                                                                     aaCATCATGACCATGGTGATGTATGCCTGTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACcaa                                                    <  1:174902/143‑1 (MQ=255)                                                                                          cacgACCATGGTGATGTACGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGGTGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAg                                               <  2:493865/140‑1 (MQ=255)                                                                                           atGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACAAACAAAgc                                              >  2:412109/1‑143 (MQ=255)                                                                                            tGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACCATGGCTGCAAACCAACAAAgcg                                             >  1:68484/1‑143 (MQ=255)                                                                                             gACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAgcgc                                            >  1:669132/1‑143 (MQ=255)                                                                                                cATGGGTATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGctct                                         <  2:694228/143‑1 (MQ=255)                                                                                                          tATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGGGGGCCCCTGCCTTCTGCCCAACTAAGCGCTCTTCCAATTtct                               >  1:236599/1‑143 (MQ=255)                                                                                                             gCCTTTCGGGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCgg                            <  1:619465/143‑1 (MQ=255)                                                                                                                tttCGTGCGGAACGCAAACACATTTCCGAAGGCGAAACCCACTTTCGGAACGCTCTGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGGGCTCTGCCAGTTTCTCgggca                         >  2:342933/1‑141 (MQ=255)                                                                                                                tttCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTa                         >  1:346158/1‑143 (MQ=255)                                                                                                                gcgcGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTa                         <  1:118925/140‑1 (MQ=255)                                                                                                                         gAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGa                >  1:760810/1‑143 (MQ=255)                                                                                                                          aaCGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGCTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTATGCCAGTGTCTCGGGGACAGTCAGGaa               >  2:521057/1‑143 (MQ=255)                                                                                                                              cgagcacaTGTCCGACAGCGGAACCCACGTTGGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGc           <  2:883269/139‑1 (MQ=255)                                                                                                                               aaaCACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCCGTTTCTCGGGTACAGTCAGGACGAGCt          >  1:769504/1‑143 (MQ=255)                                                                                                                               aaaCACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGGTTCTCGGGTGCAGGCAGGAAGGGCt          >  2:512311/1‑143 (MQ=255)                                                                                                                                   acaTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTgcgc      <  1:671859/143‑1 (MQ=255)                                                                                                                                   acaTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTCCCAGTGTCGCGGGTACAGTCAGGAGGACCTgcgc      >  2:265283/1‑143 (MQ=255)                                                                                                                                     aTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAGGGGCTGCGCgg    >  1:291470/1‑143 (MQ=255)                                                                                                                                      tttCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGAATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAACCCAACAAAGCGCCCTGCCAGTTTCTCGGGTACAGTCAGGCAGAGCAGCCCGGa   >  2:621009/1‑143 (MQ=255)                                                                                                                                       ttgccaaaGCGAACCCCACTTTCGGAACGCGATGGAATCTTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGAAAGAGCTGCGCGGAc  <  1:7072/138‑1 (MQ=255)                                                                                                                                               |                                                                                                                                       GATCCCTCCCTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGAC  >  NC_000913/2144022‑2144298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.