| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3305904 = | 49 (1.020) | 3 (0.070) | 3/264 | 7.2 | 6.5% | intergenic (‑87/+67) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| ? | NC_000913 | 3305929 = | 41 (0.910) | intergenic (‑112/+42) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACG > NC_000913/3305763‑3306039 | tCACCACGCCGCCAAGCAGCGACGGTGACGGTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAGAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGGACAAAAGACAGAAAAagag > 1:32949/1‑143 (MQ=255) accacGCCGCCAAGCAGCGACGGGGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGcc < 1:845967/143‑1 (MQ=255) ccacGCCGCCACGTAGCGACGGTGACGTTTTGGTGGGGGTTATTGTTGCCATGATGGCTTCTCTCCAGTAAAAACTAGTGCGACTGCGTTGTTATGCATTGCACTGTACCATTACACGAGTACAAAAGACAGAAAAAAAGccc < 2:364642/143‑1 (MQ=255) ccgccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTCCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATg > 1:440890/1‑143 (MQ=255) gggagcGACGGTGACGTTTGGGTGGTGGTGAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTGATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTaaaa < 1:631354/140‑1 (MQ=255) tgACGGTGAGTTTGGGGGGGGGGTTAGGGTTGCCATGAGGGCTTAACTCCAGTGAAAAATAGTGCAACGGCGTGGATATGCAGGGCACTGTACCAGTACACGAGTACAAAAGAAAGAAAAAAAGCCTCGATGGTAAAAATCgg < 2:545297/142‑1 (MQ=255) cGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGCAAAAAAGCCCCGATGGTGAAAATCgg > 1:358830/1‑143 (MQ=255) gACGGTGACGTTTGGATGGGGGTTAGTGTTGCCATGAGGGCGTCTCTCAGAGGAAAAATAGGGCGACTGCGTTGTTATGAATTGCACGGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCggg < 2:457274/143‑1 (MQ=255) ggTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCt < 1:474/143‑1 (MQ=255) gTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCTAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAAACgcgccag > 2:704639/1‑137 (MQ=255) gTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTg > 1:246498/1‑143 (MQ=255) ggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACa < 2:702637/143‑1 (MQ=255) ggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACa > 1:462628/1‑143 (MQ=255) ggtGAGTGTGGCCAGGAGGGCTTCTCGCCAGTGAAAAATAGTGAGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACa < 2:572515/143‑1 (MQ=255) ctAGTGCTGCCACCGGGGCTTCTCTCCAGTGACAAATAGTGCGCCTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGa < 1:563105/142‑1 (MQ=255) gCCATGAGGGCTTCTCTCCAGGGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGATTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTc < 1:720320/143‑1 (MQ=255) cATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGc > 2:528475/1‑143 (MQ=255) tGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCCTTGCACTGGACCAGTACACGAGCACCCAAGACAGAGACACAGCCCCGATGGTAAAAATCGGGGCTGAATATATTAGTGTACCGGGTGTGTTAGcag > 2:332728/1‑141 (MQ=255) ttCTCTCCAGTGAAACATAGTGCGGCCGCGTTGTTATGCATTGCACTGTTCCTTTTCACGTTGACAAAAGCCAGAAAAAAAGCCCCGCTGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCg < 1:439860/143‑1 (MQ=255) tctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATCTTATTTTACCGATTGTGTTCGCTGTACAGCga > 1:420254/1‑143 (MQ=255) cgctcCAGTAAAAAAGAGTGCGACTGCGTTGGTATGCAGTGCACTGTACCAGTACACGAGTCCAAAGGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCgat < 2:143107/141‑1 (MQ=255) ccAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACAAGTACAAAAGAGAGACAAAAAACCCCGATGGTACAAATCGGGGCTGTATAAATTATTTTACAGATTGTGTTCGCCGGTCAGCGATGCtt > 2:767469/1‑143 (MQ=255) gTGAAAAATAGTGCGTCTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGCCAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTAAGCGGTGATTACg > 1:177635/1‑143 (MQ=255) tGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGc > 2:169700/1‑143 (MQ=255) tGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTAAGCGATGATTACGc > 1:602818/1‑143 (MQ=255) aaaaaTAGTGCGACTGCGTTGTTATGCATTGCACTGTGCCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCAt < 2:696667/143‑1 (MQ=255) aaaTAGTTCGACTGTGTTATTATGCATTGCACTTTACTAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATca < 2:602946/143‑1 (MQ=255) agtgggagtgggTTGGTATGGATTGCACTGTCACAATCCGCCACTACAAAAGACAGAAAGAAAGCCCCGATGGTAATAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcaccac < 2:852363/143‑1 (MQ=255) aGTGCGACTGCGTTGTTATGCAGTGCACTGTACCAGTACACGAGTACAAAAGGCAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCGGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcaccac < 1:202520/143‑1 (MQ=255) gTGCGCCTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTTCGCATCaccacc < 2:296477/143‑1 (MQ=255) cGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATCGTAAAAATCGGGGCAGTAAATATTATTTTACAGAGTGTGTACCCTACTCCCCGATGATTACGCATCACCACCGag > 2:851990/1‑142 (MQ=255) tGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg > 1:811243/1‑143 (MQ=255) ttGCACCGTACAAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGa < 1:787615/143‑1 (MQ=255) ttcACTGTACTATTACACGAGTACAAAAGACAGAAAAAGAGGCGGGATGCTAAAAAGCGGGGCTTTATATAGTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGaa < 1:326165/141‑1 (MQ=255) gCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAat < 1:197972/143‑1 (MQ=255) aCTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGAGTGTGATCGCTGGTCAGCGATGATTACGCATCACCACCGAAACGACGCCGACCAGTAGAacca > 2:815497/1‑143 (MQ=255) tctACCACTACACGAGTACAAAAGACACAACAAAGGTCCCGATGGTAAAAAGCGGGGCTGTATATATTAGTGTACATATTGTGTTCGCTGTTCAGCGATGATTACCCATCACCACCGAAACGACGACGACCGGTAGAatcatc < 2:376315/141‑1 (MQ=255) tGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAatcatc > 1:111560/1‑143 (MQ=255) aCCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacg > 1:388208/1‑143 (MQ=255) cccgTACACGAGGACATAGGACAGAAAAAAAGCCTCGATGTTATAAATCGGGGCTGTAGATAGTATTTTACAGATTGTGTTCGCGGTTCAGCGGTGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacga < 2:526417/140‑1 (MQ=255) cAGGACACGAGGACAAAAGACAGAAGAAAGGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacgac < 1:250816/143‑1 (MQ=255) gTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGAcgc < 1:704639/143‑1 (MQ=255) acGAGGACACAAGCCAGAAGAAAAGCCCTTATGGTAAAAATCCGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGGTCAGCGATGATTACGCAGCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAg < 2:358830/143‑1 (MQ=255) tACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCgg < 1:169700/143‑1 (MQ=255) aaaaGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGCATCATCACGACGCGGAGCGCGGCCt > 1:420616/1‑143 (MQ=255) aGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCa < 1:528475/143‑1 (MQ=255) aGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCACTTATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCa < 1:123979/143‑1 (MQ=255) aGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGAGAGCATTACGCGTCGCTTTCCCGATAACAACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCacgac > 2:857709/1‑143 (MQ=255) aacaaaaaGCCCCGTTTGTAAAATCCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCacgacg < 2:791579/140‑1 (MQ=255) | TCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACG > NC_000913/3305763‑3306039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |