Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 49 [0] [0] 49 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)48 (1.080) 42/262 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815719‑3816000
                                                                                                                                           |                                                                                                                                              
gcctGCTTGCGAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                                                             <  1:589286‑M1/142‑4 (MQ=255)
      ttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTACATGCCTTAGCTCATCATCTGACTTTTCTACAGACAAAAAAAAGGCCACTCATCAGTCGCCTTACACATCAGTTTGCCAGCACCGCCTCCTGAcgtccccgg                                                                                                                                       >  2:387304‑M1/1‑134 (MQ=255)
           aaGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactt                                                                                                                                  <  1:527732‑M1/143‑15 (MQ=255)
              cgcAAATTCAATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa                                                                                                                               <  1:69793‑M1/143‑18 (MQ=255)
                 aaaTTCAATACACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                            <  1:51972‑M1/143‑21 (MQ=255)
                 aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatta                                                                                                                            >  1:585206‑M1/1‑123 (MQ=255)
                  aaTTCCACAAACTGGCGCTGATATGGTTTCATGCCCTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:137608‑M1/143‑22 (MQ=255)
                  aaTTCAATAGACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgttccctgcacttcaatgat                                                                                                                           <  2:808015‑M1/143‑22 (MQ=255)
                   aTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg                                                                                                                          <  1:689954‑M1/143‑23 (MQ=255)
                          aaaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGAcgtcccctgcacttcaatgatgcgcccgc                                                                                                                   >  2:598093‑M1/1‑114 (MQ=255)
                               ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  1:270847‑M1/143‑35 (MQ=255)
                               ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCTCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:715442‑M1/143‑35 (MQ=255)
                               ggCGCTGATATGGTTTCATGCCTTCACTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              >  1:370431‑M1/1‑109 (MQ=255)
                                  gcTGATAGGGTTACATGCCGTCGCTCCTCATCTTACTTTGCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  1:514936‑M1/143‑38 (MQ=255)
                                    tGATATGGTTTCATGCCTTCGCTCCTCGTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat                                                                                                         <  2:127542‑M1/143‑40 (MQ=255)
                                      atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       >  1:679926‑M1/1‑102 (MQ=255)
                                        atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcact                                                                                                     >  1:650861‑M1/1‑100 (MQ=255)
                                        atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcccttcaatgctgcccccgccttcggtcctccct                                                                                                     >  1:391699‑M1/1‑100 (MQ=255)
                                           gTTGCATGACGTTGCGCCTCATCTTGCGTTTCTGCAGGCAAGAAGAAGGCGACTCTTCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacg                                                                                                  <  2:490392‑M1/143‑47 (MQ=255)
                                             ttCATGCCATCGCTCCTCATCTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtt                                                                                                <  2:626148‑M1/143‑49 (MQ=255)
                                                  gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgt                                                                                           >  1:226942‑M1/1‑90 (MQ=255)
                                                    cTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTAGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactcacatgatgcgcccgccctcggtaataactacgctcacgacg                                                                                         >  2:673705‑M1/1‑88 (MQ=255)
                                                      tCGCTCCTCATCTGAACTTGCTCCACACAAAAAACAGGCGACTCATCAGTCCCGCTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgattcccccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  2:511470‑M1/143‑58 (MQ=255)
                                                       cGCTCCTCATCTTACTTTTCTACATACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtc                                                                                      <  1:633640‑M1/143‑59 (MQ=255)
                                                       cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtc                                                                                      >  1:262310‑M1/1‑85 (MQ=255)
                                                         ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctc                                                                                    >  1:207210‑M1/1‑83 (MQ=255)
                                                            ctcATCTTTCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                 <  1:519783‑M1/143‑64 (MQ=255)
                                                            ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgtcccttttcgttcatcactacgttcatgtcgttctcctc                                                                                 >  1:395346‑M1/1‑80 (MQ=255)
                                                                tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                                                             <  1:60485‑M1/143‑68 (MQ=255)
                                                                           tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGATTGCCAGCGCCGCCTGCTGCcgtcccctggacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcgatctctgcggcacgggcttcaac                                                                  >  2:60598‑M1/1‑65 (MQ=255)
                                                                             cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgt                                                                >  2:271395‑M1/1‑63 (MQ=255)
                                                                                  atttttaaggcgacTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc                                                           >  1:493944‑M1/7‑58 (MQ=255)
                                                                                  aacaaaaaggcGACTCATCAGTCGCCTTAAAGATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagactcttcaacgtattcc                                                           <  2:743262‑M1/140‑86 (MQ=255)
                                                                                  aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc                                                           >  1:527069‑M1/1‑58 (MQ=255)
                                                                                   aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcaattcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          >  1:539240‑M1/1‑57 (MQ=255)
                                                                                    aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcctcccctgcgcgacaatgatgcgcccgtcttcggtcctcactacctccatgtcggtctctgcggcagagccgtccgcgcattccac                                                         >  2:424955‑M1/1‑56 (MQ=255)
                                                                                     tttaaggcGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcgtgtctgtctctgcggcacagtcttcaacgtattccaga                                                        >  1:41994‑M1/4‑55 (MQ=255)
                                                                                                tcatcaGTCGCCTTAACAATCAGGTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgc                                             <  1:799104‑M1/143‑100 (MQ=255)
                                                                                                                aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcggtcatcactacgttcatgtcggtctctgcggcacagtcttcaacgtattccagagcgcaaaccccttcgccgttcaaaact                             >  1:854432‑M1/1‑28 (MQ=255)
                                                                                                                aaaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatcatgcgcccgtcttcggtcatcactacgttcatgtcggcctctgcggcagcgtcttcaccgtattccagaccgcaacccgcctcgcccctcacactt                             >  2:832097‑M1/1‑28 (MQ=255)
                                                                                                                    cAGTCTTCCAGCGCCGCCTTCTGCcgtcccctgcacttcaagcatgcgcccgtcttcggtcatcactacgttcatgtcggtccctccggcacagtcttcaacgtactccagctcgcaaaccgcttcgccgttcacaattccga                         <  2:239727‑M1/143‑120 (MQ=255)
                                                                                                                      gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtcttccagatcgcaaacagcttcgacgttcacactaccgact                       >  1:73288‑M1/1‑22 (MQ=255)
                                                                                                                        ttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtcttccagatcccccaccccttcgccgttcacaattccgaaaga                     >  1:316820‑M1/1‑20 (MQ=255)
                                                                                                                             aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactccgttcatgtcggtctctgcggcagagtctccaacgtattcaagatagcgacccgcttcgccgctcaccactccgccacaacctg                >  1:595947‑M1/1‑15 (MQ=255)
                                                                                                                              gcgcCGCCTTCTGCcgtccccagcactacaacgacgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgc               <  1:43061‑M1/143‑130 (MQ=255)
                                                                                                                               cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg              >  1:64798‑M1/1‑13 (MQ=255)
                                                                                                                                 ccgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc            >  1:882143‑M1/1‑11 (MQ=255)
                                                                                                                                 ccgccTCCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcacccctacgttcatgtcggtctctgcggcagaggctgcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc            <  1:13666‑M1/143‑133 (MQ=255)
                                                                                                                                           ccgtccgccgcagttcactgatgcgcccgtcttcggtcatcactccgttcatgtcgttctctgcggcagagtcttctacttattctagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  <  2:542853‑M1/143‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                              
ACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815719‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.