| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 44 [0] | [0] 44 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 40 (0.880) | 36/268 | 0.2 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909169‑3909451 | acattAACACCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG < 2:248133‑M1/141‑1 (MQ=255) cAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAAGCGAGCTCAGCCAGgcgcaag > 2:872884‑M1/1‑136 (MQ=255) gCCCTCTGCGCGCCAGGGCGTTCGCCAGACCACCACCTTCCGTATTGAGCGGCGGCTTCATTTCAGTGAGGAGCGCCAGCGACGTGTCGTCGACACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagct < 2:810586‑M1/143‑10 (MQ=255) cccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCACgcgcaagctc > 1:693273‑M1/1‑133 (MQ=255) ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTCTTGGGCGGCGGCGTCACTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGAAGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctca > 2:195743‑M1/1‑132 (MQ=255) ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCCGgcgcaagctcg > 2:194787‑M1/1‑132 (MQ=255) ccGCCATAGCGTTCGCCGGACCACCCCCTTCCGTATTGGGCGGCGGCGTCAGTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcagga < 1:254219‑M1/143‑19 (MQ=255) gCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTCACATCCAGATCAGCCGGgcgcaggcccggtcagtaac > 1:780978‑M1/1‑123 (MQ=255) agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctccgtcaggagcagg > 1:577802‑M1/1‑120 (MQ=255) agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATACAGATCAGCCAGgcgcaagctcaggcaggaacaag > 2:337308‑M1/1‑120 (MQ=255) gCCAGACCACCACCTGCGGTAGTGGGCGGCGGCGTCATTGCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccg < 1:312515‑M1/143‑33 (MQ=255) accaccaccTTCCGTATTGGGCGGCGGCGTCCTTACAGTGAACAGCGCCCGCGACATACCGTCGATACCGCGAGTGAGGGTGGACAGTAACATCCAGATCAGCCCGccgcaagctcagtcaggcaaacggcaacaccgaacga > 2:42827‑M1/1‑106 (MQ=255) accaccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaact < 2:337156‑M1/143‑38 (MQ=255) caccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactca > 1:32088‑M1/1‑104 (MQ=255) caccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactca < 1:577333‑M1/143‑40 (MQ=255) accaccTTCCGTATCGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac < 2:359371‑M1/143‑41 (MQ=255) accaccGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac < 2:656171‑M1/143‑41 (MQ=255) cttgGGCGGCGGCGTCATTTGAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat < 2:150179‑M1/142‑53 (MQ=255) ggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTACAATCCAGATCACCCAGgcgcaagctcagccagcaccagcgccataccgaacctccccgggcccgcgatcacccgc > 2:204804‑M1/1‑84 (MQ=255) cggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaacacaccgggacggcgatcagcagcgc > 2:514018‑M1/1‑82 (MQ=255) cggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGAGCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgc < 1:416319‑M1/143‑62 (MQ=255) ggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGGGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcg < 1:860405‑M1/143‑63 (MQ=255) gcgTCACTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcga < 2:218328‑M1/143‑64 (MQ=255) tCATTTCAGTGAACAGCGCCAGCCACACACCTTTGCTACCGCGAGTGATGGTGGACATTAAAGTCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataa < 1:594210‑M1/143‑67 (MQ=255) gacttcagTGCACAGCGCCAGCGACATACCGTCGATACCGCGAGTCATGGTGGACATGAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaa < 2:688166‑M1/140‑68 (MQ=255) tCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa < 1:2266‑M1/143‑72 (MQ=255) tGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtca > 1:286708‑M1/1‑68 (MQ=255) tGAACAGCGCCAGCGACAGCCCGTCGATACCGCTAGTGATGGTGTACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtca < 2:47542‑M1/143‑76 (MQ=255) aGCGCCAGCGACATCCCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaac < 1:186780‑M1/143‑81 (MQ=255) gcgcCAGCGACATCCCGGCGATACCGGGAGTGATGGTGGACATTAAAATCCAGATCAGCCGGgcgcgaggtcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacg < 1:405481‑M1/143‑82 (MQ=255) gCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgt > 1:472198‑M1/1‑56 (MQ=255) gACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtag < 1:414313‑M1/143‑90 (MQ=255) aCATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtaga > 1:394493‑M1/1‑53 (MQ=255) tACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctaagtcaggaacagggcgataccgacactcaccgggacggcgatcagcagcgcgataaacgaagtccccaacgtaccgcaaatcc > 1:395304‑M1/1‑50 (MQ=255) gTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagataggcac > 2:727138‑M1/1‑46 (MQ=255) gcgAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgatacacgaagtcacccacgtaccgtagttcgtcacccgcgcccc > 1:344007‑M1/1‑37 (MQ=255) gACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactccccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtggatcggcacgagcgccccgtaggtgtcggtc > 1:178679‑M1/1‑24 (MQ=255) gACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaaggcaccaacgtaccgtagatcggcaccagcgccccggagatatcgttc > 1:178678‑M1/1‑24 (MQ=255) aTTAAAATCCAGATCCGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt < 2:245648‑M1/143‑123 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt > 2:450416‑M1/1‑21 (MQ=255) tcaaaatcCAGATCACCCAGgcgcaagctcagtcaggaacagggcgataccgacactccccgtgacggcgatcagcagcgcgatcaacgtagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtg < 1:109‑M1/141‑124 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggt < 1:727138‑M1/143‑140 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaacagcgccccgtagatatcgttcggtgcatcccactctttagc > 2:475177‑M1/1‑4 (MQ=255) cAGgcacaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggtc < 1:425111‑M1/143‑141 (MQ=255) | AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909169‑3909451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |