New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1396661	NA (NA)	4 (0.090)	4/268	6.6	11.0%	noncoding (618/1195 nt)	IS5	repeat region
	?	NC_000913	1428197 =	34 (0.710)					noncoding (598/1196 nt)	IS5	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGC  >  NC_000913/1428061‑1428339                                                                                                                                          |                                                                                                                                               gCCGGCATCGGCTGAGACAAATTGCCCCTCTCCATGAAGCAGATGACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCaa                                                                                                                                          <  1:547683/143‑1 (MQ=17)   cGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCCGTGGGGCGGGCCGCTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGccgcag                                                                                                                                        >  2:403697/1‑139 (MQ=11)     gCATCGGCTAAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTg                                                                                                                                      <  1:550144/143‑1 (MQ=17)      cATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGc                                                                                                                                     <  1:55916/143‑1 (MQ=32)        tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTTGCCTTCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCa                                                                                                                                   <  1:817200/143‑1 (MQ=255)        tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCa                                                                                                                                   >  1:387966/1‑143 (MQ=32)          ggCTGAGACAAATTGCTCCTCTCAATCAAGCCGCTGACCCAGCTGATTGAGGTCATGCTCGCTGGCCGCGGTGGTGACCAGGCTGTGGGGCAGGCAACTCTTGGCATCG‑ACACCAATGTGGGCCTTCAGGCCAAAGTGCCAcc                                                                                                                                 >  2:722067/1‑142 (MQ=11)            cTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGa                                                                                                                               <  1:155231/143‑1 (MQ=32)                       tGCTCCTCTCCAGGAGGCAGATTAGCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCtt                                                                                                                    <  2:577369/143‑1 (MQ=12)                        gCTCCTCTCCATGAAGCAGATAACCCGTTTGATTGTGGTATTGCTCTGACCCCGCGGTGGTGACCAGGCAGTCGGTCAGTTCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTg                                                                                                                   <  1:400323/143‑1 (MQ=11)                            ctctCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGAACAGGATGTTGTGCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCCTCATGCCAAAGTGCCTCTGATTGACTTTCTAGGtat                                                                                                               >  1:124743/1‑141 (MQ=11)                                ccATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATg                                                                                                           <  1:643498/143‑1 (MQ=32)                                   tGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGCCCACGCACGGCATCGCAGAGCACTG‑ATGCCACCATGCCAAAGTGCCACTGATAGCCTTTCTTGGTCTGATGCAt                                                                                                        >  2:623268/1‑143 (MQ=11)                                                                        gcgCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTagag                                                                   <  1:617073/141‑1 (MQ=17)                                                                            cgcgGTGGTGACCAGTCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                               <  2:41881/143‑1 (MQ=17)                                                                            cgcgGTGGTGACCAGGCTGTGGGTCAGGCCACTTTTTGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                               <  1:743477/143‑1 (MQ=17)                                                                              tggtgttGTCCAGGTTGTCTGTCTGGTCACTCTTGTCTTCC‑ACTTCATTGTGTGCCTTCATGCCAAAGTGTGACTGTTCGCCTTTCTTTGTCTCTTGCATCTCCTGATCGCTTTGCTGCTTTTTGTTCTTGGTAGAGCTgtgt                                                             <  2:82025/142‑1 (MQ=255)                                                                              cgGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGt                                                             <  1:55604/143‑1 (MQ=32)                                                                                gtggtgACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGc                                                           <  1:696017/143‑1 (MQ=32)                                                                                        cAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCTatgc                                                   >  1:757806/1‑142 (MQ=17)                                                                                             tgtgGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg                                              <  1:623268/143‑1 (MQ=32)                                                                                             tgtgGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGAtggtg                                              >  2:638213/1‑143 (MQ=32)                                                                                                     aGGGCACTCTGGGCGTCG‑ACACCAGTGTGGGCCTTCAGGCCAAAAGGAGACTTATTGCCTTTCTTGGTCGGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                      <  1:240089/143‑1 (MQ=11)                                                                                                     aGGCCGCTCTTGGCTTCG‑GCAGCTATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTGTCTTGGTCTGCTGCTGCTCCGGCTCGCGTTGCTGCTCGTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                      <  2:846894/143‑1 (MQ=11)                                                                                                        ccACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGGCTCGATGATGGTGGCATCCACCaa                                   >  1:764901/1‑143 (MQ=21)                                                                                                         cACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGGTTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGACGGTGGCATCCACCaag                                  >  1:524865/1‑142 (MQ=21)                                                                                                                 gCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTg                          >  2:641930/1‑143 (MQ=38)                                                                                                                      g‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGCTCGCCTCCACCAACGTCCCCTGCGtct                     >  1:598954/1‑142 (MQ=11)                                                                                                                           ccAATGTGGGCCTTCGTGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTcatcat                 <  2:773441/143‑1 (MQ=255)                                                                                                                                    gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTTGCTGCCTCAATGATGGTGGCATCCACCAACGTACCTTGGGGCATCATGACGCCTGc        >  2:775895/1‑143 (MQ=11)                                                                                                                                    gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCaaa                                  >  2:233462/1‑117 (MQ=39)                                                                                                                                    gCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCaaa                                  <  1:233462/117‑1 (MQ=39)                                                                                                                                        tCATGACAGAGTGGCACTGATTGCCTGTCTTGGTCTGATGCATCTCCGGGTCGCGTTGCTGCTCTTTGTTCTTGGTAGCGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCg    <  2:406862/143‑1 (MQ=14)                                                                                                                                         cATGCCAAACTGCCACCGATTGCCTTTCTTGGTCTGATGCATCTCCGGAGCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCgg   <  1:810237/143‑1 (MQ=255)                                                                                                                                          aTGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgc  >  2:340537/1‑143 (MQ=39)                                                                                                                                          |                                                                                                                                               GCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCG‑ACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGC  >  NC_000913/1428061‑1428339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.