| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 7 (0.240) | 17 (0.670) | 16/252 | 0.6 | 75.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 5 (0.200) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTG > NC_000913/1207650‑1207930 | ggtggACGCATCTGGTGCCACGCTGGAGAGGGCGCGGTACGACCAGTTACTTACCGCACTTCGCGGCCTGCTCCGAAGCCGAAAGACACCGCTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTg < 1:299663/143‑1 (MQ=255) ttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 2:92394‑M1/135‑143 (MQ=255) ttcagcgcattacgttgtagatctgtgtgctggtcgtttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttctttcttcattttcataacggttggttggg < 2:104584‑M1/9‑4 (MQ=255) gatCCGGTGGCTGCCTGGAGACGGGGGGGCACGACCAGTGACGTACCGCACTTGGCGGGGTGCTGTTGCGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA < 2:416396‑M1/142‑1 (MQ=255) ccAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGAAGTGTGGAAGCAGCTCTCGAAAACCTTGGTTTGGGAGACGGctct > 2:107765‑M1/1‑139 (MQ=255) cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:111130‑M1/143‑6 (MQ=255) cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 2:298573‑M1/143‑6 (MQ=255) aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc < 2:335505‑M1/143‑7 (MQ=255) gatctgtggtcgtgtcatttgttgatacgcgtacatagccaataagcatgttccctcggtctcgtgaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa > 1:119218‑M1/116‑143 (MQ=255) gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGATAAGCCGCAAGAATCCGTTTGGCGATCTCACATCGGATGGCACTGTCCAAGCGGCTCTCCCAACCCTTGGTTCGGCAGACGGctctgcattacc > 2:36738‑M1/1‑131 (MQ=255) tgtgttctggtcatttgttgctacgcgtacatagccaataagcatgttaaatcctcctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca > 2:520401‑M1/112‑143 (MQ=255) ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTACGCCGAAATGTTGCATCTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:382215‑M1/143‑18 (MQ=255) tgttctggtcatttgttgatacgcgtacatagccaataagcatgttaactccccctggtaaaagccggaatgatgccatttgcttgttatttcttcattttcatagacgTTGGTTTGGGAGTAGGAGCAAAACTCAAtgcaga < 2:161505‑M1/34‑2 (MQ=255) gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCATGGCTTGGGAGAACGctccgccttacctgcgggtg > 2:193186‑M1/1‑123 (MQ=255) aCCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:445778/143‑1 (MQ=255) gatacgcgtacatagccaataagcatgttaaatccccctggcaaaagcaggaatgatgccatttgcttgctatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc > 1:365831‑M1/93‑143 (MQ=255) gcttacatttccaataagtttgttaattctcccttgtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc > 1:917‑M1/88‑143 (MQ=255) atatagctaataagtatgttaaatccccctggtaatagtaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAATTTAATGCAGCAACGGCTACATTAGGACGCACCGGtt > 2:204931‑M1/84‑143 (MQ=255) cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:292097‑M1/1‑93 (MQ=255) cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGcactgcattacctgttggtgtcccggatgcgtgggcttcagccactacgc > 2:269372‑M1/1‑93 (MQ=255) cttaaacccccctggtaacagcaggactgatgccatttgcttgttatttcttcattttcataaacgTTGGATTGTTAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCTCCGGTTTCATAGCTATACCGGtt > 2:426844‑M1/67‑143 (MQ=255) aaGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACAGTAGGACGCACCGGTCTCATAGCTATACCggcca > 2:446941/1‑140 (MQ=255) taaatcccccttgtaaaagaaggtttgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt > 2:339264‑M1/65‑143 (MQ=255) gCAAGAATCCGTTGGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaa < 1:341128‑M1/143‑68 (MQ=255) cccctggtaaaaggaggaatgatgccatttgcttgttatttcttcattttcagaaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATTCAGCAACGGCTACATTAGTACGCACCGGTTTCATAGCTATACCGGTTATGATtgg > 1:339448‑M1/59‑143 (MQ=255) cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg > 1:464489‑M1/59‑143 (MQ=255) ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatgg > 1:211127‑M1/1‑68 (MQ=255) atagcagtaatgattccatttgcttgttatttcttcattttcataatcgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa > 2:284822‑M1/50‑143 (MQ=255) aagcaggaatgatgccatttgcttgttattccttcattttcataaacgTTGGTTTGGGAGAAGGAGCAGAGCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg > 2:383865‑M1/49‑143 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGATTGGTGGTATTGAGCa < 1:8146‑M1/97‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt < 1:414648/143‑1 (MQ=255) cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt < 1:414631/143‑1 (MQ=255) cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcactggtgccgctttttctg > 1:67137‑M1/1‑54 (MQ=255) tgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATc > 1:77982‑M1/37‑143 (MQ=255) ccattggcttgttctttcttcattttcataaaagTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGATACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGATGCTATTGCgcaaacagaagtccg < 2:333970‑M1/109‑8 (MQ=255) cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcagtggtgccgctttttctgcggaa > 1:463176‑M1/1‑49 (MQ=255) tggtatttcttcattttgataaacgTTGGTTTGGGGGAAGGAGCAAAACTCCATGCAGCGACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg > 2:473945‑M1/26‑143 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccc < 1:150100‑M1/143‑103 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagcatacccgg > 1:504538‑M1/1‑39 (MQ=255) tttcttcattttcataaacgTTGGTTTGGGAGCAGGAGCTAAACTCAATGCAGCAACGGCTACATTAGGACGCAACGGTTTCATAGCTATACCGGGTATGAATGGTGGTGGTGAGCAATCAGTAATCATGCAGTGGGGATGGa < 2:520523‑M1/123‑1 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATTAGTAATCATTCAGTGGGGGTGGAATg > 1:429988/1‑143 (MQ=255) aaCGGCTCGCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgg < 1:24270‑M1/143‑111 (MQ=255) tccTTGGTTTGGGAGAAGGAGTAAAACTCAAGGCAGCAACGGCTACAGTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt < 1:48565/142‑1 (MQ=255) ccTTGGTTTGTGAGAAGGctctgcattacctgttggtgtcccggtcccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaaggatacccggaactggcaaaggcttatccga < 1:107765‑M1/143‑126 (MQ=255) | GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTG > NC_000913/1207650‑1207930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |