Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)41 (1.430) 29/284 0.1 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)21 (0.730) 20/284 0.4 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAT  >  NC_000913/1979344‑1979626
                                                                                                                                              |                                                                                                                                            
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                              <  1:438016‑M1/1‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttcttcgcaccttccCTa                                                                                                                                            <  1:515890‑M1/3‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                            <  1:52699‑M1/3‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacgggattaatgtgctgattcaaggcatttacggaagagaaaatcggctcaaacatgaagaaatgaaatgaatgagtcagtcgagaagaatttccccgtttattcgcaccttccCTa                                                                                                                                            <  2:234169‑M1/3‑1 (MQ=255)
   gcataacgccttaaatggcgaagacactgtctacataggttgattcaaggcatttacgggagaaaaaatcgcctcaatcatgtagaaatgaaatgcctgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                           >  1:216181‑M1/140‑143 (MQ=255)
    gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaagtcggatcaaacatgaggaaatgaaatgactgagtcagccgcgaagaatttccccgcttattcgcacctgccCTAAt                                                                                                                                          <  1:31072‑M1/5‑1 (MQ=255)
     gtaacggcgtaaagggcgaagaaacggtctaaataggcggattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacttagtcagccgagaagaatttccccgcttattcgcaccttccCTAAtt                                                                                                                                         >  1:129082‑M1/138‑143 (MQ=255)
        acgcgttgaatggcgaagaaactgtctagataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                      >  2:91951‑M1/135‑143 (MQ=255)
        acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                      <  2:473722‑M1/9‑1 (MQ=255)
         cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttccCTAATTAAAt                                                                                                                                     <  2:262891‑M1/10‑1 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttccCTCATTAAATa                                                                                                                                    <  2:246326‑M1/11‑1 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggaaaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                    <  1:272664‑M1/11‑1 (MQ=255)
               gAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                               <  1:441404‑M1/143‑13 (MQ=255)
                   ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttgaCTAATTGaatacaaaacaag                                                                                                                           <  1:1964‑M1/20‑6 (MQ=255)
                   ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                           >  1:302419‑M1/124‑143 (MQ=255)
                   cgcgaagaagcggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatgtccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                           >  2:462606‑M1/124‑143 (MQ=255)
                      gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactaagtccgccgagaagaatttcccagcatattagcaccttccCTAATTAAAtacaaagaaagaca                                                                                                                        <  2:475162‑M1/23‑4 (MQ=255)
                          aTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctga                                                                                                                    <  1:503148‑M1/143‑24 (MQ=255)
                             cggtctaaataggctgattcaaggcattgacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCa                                                                                                                 >  1:231215‑M1/114‑143 (MQ=255)
                                tGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTCCTATAGATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgag                                                                                                              <  2:310626‑M1/143‑30 (MQ=255)
                                  ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACCCTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagat                                                                                                            <  1:36861‑M1/143‑32 (MQ=255)
                                  ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgacatgagat                                                                                                            >  2:343173‑M1/1‑112 (MQ=255)
                                  taaataggctgattcaaggcacttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACGCACAACtta                                                                                                            <  2:308397‑M1/35‑1 (MQ=255)
                                   aaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaa                                                                                                           <  1:426679‑M1/36‑1 (MQ=255)
                                    gcgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaaggccccgatacgagatca                                                                                                          >  2:211114‑M1/1‑110 (MQ=255)
                                    aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattccccgacgaagacgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                          <  1:118620‑M1/37‑1 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                    >  1:223280‑M1/101‑143 (MQ=255)
                                              ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                                                                <  1:322609‑M1/47‑1 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGCAAGGCAACAATCAACTTACTGTTAATGAAATGt                                                                                             <  2:498064‑M1/50‑1 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatgcccccggttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                             <  1:73228‑M1/50‑1 (MQ=255)
                                                   ggcatttaagggaccgaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                           >  1:466275‑M1/92‑143 (MQ=255)
                                                      tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgcacaagtccctgatatgagatcatgttcgtcatctggaacc                                                                                        >  2:464395‑M1/1‑92 (MQ=255)
                                                       tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                       <  2:56240‑M1/56‑1 (MQ=255)
                                                                 aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaccggg                                                                             >  2:15589‑M1/1‑81 (MQ=255)
                                                                   tcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt                                                                           >  1:480138‑M1/1‑79 (MQ=255)
                                                                    aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACt                                                                          <  2:289436‑M1/69‑1 (MQ=255)
                                                                       tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCCACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACcactggt                                                                       <  1:239129‑M1/72‑4 (MQ=255)
                                                                          cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatagagtttgtcatctggagccatagaacagggttcatcatg                                                                    >  1:355093‑M1/1‑72 (MQ=255)
                                                                           tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                   <  1:454082‑M1/143‑73 (MQ=255)
                                                                           ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTaa                                                                   >  1:380546‑M1/68‑143 (MQ=255)
                                                                            ataactaaTCACGCTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag                                                                  <  2:329798‑M1/143‑74 (MQ=255)
                                                                               aataatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccgtgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                               >  1:46386‑M1/1‑67 (MQ=255)
                                                                               aataatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaaagggttcatcatgagtca                                                               >  2:419897‑M1/1‑67 (MQ=255)
                                                                                ataatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                              <  1:69945‑M1/143‑78 (MQ=255)
                                                                                        tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                      >  1:234385‑M1/1‑58 (MQ=255)
                                                                                          atgaaaggaccgagtgacacgcgtattatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCACCTTGATGTTAATGAAATGGTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                    >  2:481384‑M1/53‑143 (MQ=255)
                                                                                                tgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTCTTTAATGCGGAGAATCAGTTGACTAt                                              <  2:152715‑M1/97‑1 (MQ=255)
                                                                                                        tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATTTTGTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTtat                                      <  2:109515‑M1/105‑1 (MQ=255)
                                                                                                        tcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTtat                                      <  2:117733‑M1/105‑1 (MQ=255)
                                                                                                           gccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACCTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                   >  2:429353‑M1/36‑143 (MQ=255)
                                                                                                            ccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAACAACTTAATGTTAATGAAATGATATACATATAATAAACACATGATTAATGCGGAGAATCAGAAGACAATGTGCGTATAata                                  <  2:125665‑M1/109‑2 (MQ=255)
                                                                                                                 aagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGAACACTATTTTCTTATAATTAAAtt                             <  2:383660‑M1/114‑1 (MQ=255)
                                                                                                                        cAGACACTTACCGCACACCAAACTAAggaaggtgcgaacacgtccctgatatgagatcatgtttgtcatctggagccatagaacagggctcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc                      <  1:442196‑M1/143‑118 (MQ=255)
                                                                                                                              cttattcgcaccttcaCTAATTAAATACATATAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGa                >  2:462427‑M1/17‑143 (MQ=255)
                                                                                                                                   tcgcaccatccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTATACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAcc           >  1:262891‑M1/12‑143 (MQ=255)
                                                                                                                                   cGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcgtcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga           >  1:261521‑M1/1‑15 (MQ=255)
                                                                                                                                    cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCg          >  1:56240‑M1/11‑143 (MQ=255)
                                                                                                                                     gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCgg         >  2:271432‑M1/10‑143 (MQ=255)
                                                                                                                                      acaacaAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa        >  1:220259‑M1/1‑12 (MQ=255)
                                                                                                                                      acaacaAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctgcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa        <  2:77118‑M1/143‑132 (MQ=255)
                                                                                                                                          caaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagggaattcagcagtaagcgccgtcagaccacaaacgagg    >  2:50510‑M1/1‑8 (MQ=255)
                                                                                                                                            ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAt  <  2:29298‑M1/141‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                            
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAT  >  NC_000913/1979344‑1979626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.