Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,375,828 IS186 (+) +4 bp coding (132‑135/963 nt) menC ← O‑succinylbenzoyl‑CoA synthase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2375828 =0 (0.000)20 (0.720) 18/276 0.6 100% coding (135/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?NC_000913 = 2515617 NA (NA)noncoding (1345/1345 nt) IS186 repeat region
* ? NC_000913 = 23758310 (0.000)27 (0.970) 21/276 0.3 100% coding (132/963 nt) menC O‑succinylbenzoyl‑CoA synthase
?NC_000913 2514273 = NA (NA)noncoding (1/1345 nt) IS186 repeat region

CTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGA  >  NC_000913/2375686‑2375968
                                                                                                                                              |                                                                                                                                            
gcagcttacagggggccattcgtgggacagtatcccgaacagtctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggag                                                                                                                                              >  2:329113‑M1/143‑143 (MQ=255)
 tGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGgaga                                                                                                                                             <  2:399561/143‑1 (MQ=255)
     aaTGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtc                                                                                                                                         <  2:287111‑M1/143‑3 (MQ=255)
         aggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgagccgtcgcattcttcagatggttcaacccttaggttagcgcttatgggaGGTCtccccg                                                                                                                                     <  2:519630‑M1/10‑2 (MQ=255)
             ggccattcgtgggacagtagccctgacagcctacagaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCAcc                                                                                                                                 >  1:486502‑M1/130‑143 (MQ=255)
                 attcgttgtacattatccttgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttacgttagagcttatgggaGATCTCCCCCCACCCTTc                                                                                                                             >  1:75247‑M1/126‑143 (MQ=255)
                  ttcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATATCCCCCCACCCTTcg                                                                                                                            <  1:392657‑M1/19‑1 (MQ=255)
                  cGCCAAAGGCCACGGCAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCTAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaa                                                                                                                            <  1:50331‑M1/143‑16 (MQ=255)
                                tccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg                                                                                                              <  1:157054‑M1/33‑1 (MQ=255)
                                tccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCCCTCGCCTTCACg                                                                                                              <  2:8874‑M1/33‑1 (MQ=255)
                                  cctgacagcctacaacacgcgattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCACCGCTCCGCGCTCGCCTTCACGCa                                                                                                            >  2:461368‑M1/109‑143 (MQ=255)
                                  cctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttcagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACgcc                                                                                                            <  1:369634‑M1/35‑2 (MQ=255)
                                   ctgagggcctacagaacgcaatggaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAg                                                                                                           >  2:385874‑M1/108‑143 (MQ=255)
                                       tCTGCGTTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacg                                                                                                       <  1:310091‑M1/143‑37 (MQ=255)
                                       cagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCaa                                                                                                       >  1:324030‑M1/104‑143 (MQ=255)
                                          cctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACa                                                                                                    <  1:282480‑M1/43‑1 (MQ=255)
                                            ggTAGCTCGCAATCGCCTGCCAGCCAGTTATTTAACCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGATTCCTGACTGAAGCCCGGCAGTGGAGGGATCtccaataagcgctaactaaagcgtagtggtacgacgcccga                                                                                                  >  2:322556‑M1/1‑102 (MQ=255)
                                                  tctcaatCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCGTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgat                                                                                            <  1:321311‑M1/140‑48 (MQ=255)
                                                    gcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGt                                                                                          <  1:152099‑M1/53‑1 (MQ=255)
                                                    gCAAGCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgattt                                                                                          <  2:223708‑M1/143‑50 (MQ=255)
                                                       gccgcCGGCCAGCCAGTTCTCCACCCAGGCAAGCAGCACGCTTTGCGCGTCTTCCCAGGTGTCCTGACCGCAGCCCGGCAGTGGGGAGGTCtcccatatgcgctaacttaagggttgtggtattacgcctgatatgatttaac                                                                                       <  1:6955‑M1/141‑53 (MQ=255)
                                                            ctgcctgcCAGTTCTTTACCCATGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGCCTGAAGCCCTGCAGTGTGGAGTTCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgcc                                                                                  <  2:437761‑M1/143‑58 (MQ=255)
                                                            agaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGtt                                                                                  >  1:526949‑M1/83‑143 (MQ=255)
                                                              gcccgccgGTTATTTGCCTGGGCTAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgcaaacttaagggttgtggtattacgcctgatatgatttaacgtgccga                                                                                <  2:380131‑M1/143‑60 (MQ=255)
                                                              gccagccaGTTATTTACCCAGGCAAGCAGCACACTTGGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccga                                                                                <  2:477199‑M1/143‑60 (MQ=255)
                                                              aacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGtttt                                                                                >  1:282217‑M1/81‑143 (MQ=255)
                                                                   ccagTTATTTACCCAGGCAAGCAGCACATTTTGCGCTTCTTCCCAGGTTTCCTGATTTAAGCCCGGCAGTTGGGAGTTCtcccataaccgctaacttaagggttgttgtattacgcctgatatgatttaacgtgccgatgaat                                                                           <  1:77337‑M1/143‑65 (MQ=255)
                                                                           ttACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca                                                                   <  1:285769‑M1/143‑73 (MQ=255)
                                                                           tgccccgggCAAGCAGCCCACTCTGCGCCGCTTCCCAGGTCTCCTGCCTGAAGCCCGGCAGTGGGGAGATCccccataagcgctatcgtaacggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca                                                                   <  1:90760‑M1/140‑73 (MQ=255)
                                                                                  cgacgcaccgaggcgtcgcattcttcagattgttcaacccttaagttagcgcttacgctaGATCTCCCCCTACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGaa                                                            >  1:482504‑M1/61‑143 (MQ=255)
                                                                                     aaGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCCGCAGTGTTGTCGACgcccataggcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactgg                                                         <  1:239564‑M1/143‑83 (MQ=255)
                                                                                      agcagcACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccagaagcgctaacttgagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggt                                                        <  2:454832‑M1/143‑84 (MQ=255)
                                                                                           gaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCCTCCCGCACGCACACATACAACCCGTCGCGGGACTTGATCCGCCTGTCGCGCAGCAccgcccgcg                                                   <  2:453614‑M1/92‑4 (MQ=255)
                                                                                            acgccttgcgccTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaa                                                  <  2:390713‑M1/138‑90 (MQ=255)
                                                                                              acTGTGCTCCTCTTCCCAGGTTTCCTGACTGAACCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgagttaacgtgccgatgaattactctcacgataactggtcagcaatt                                                <  2:412434‑M1/143‑92 (MQ=255)
                                                                                                  tGCGCCTCTTCCCCGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctatcttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctgg                                            <  2:219556‑M1/143‑96 (MQ=255)
                                                                                                  tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctgg                                            <  1:298182‑M1/143‑96 (MQ=255)
                                                                                                   gcgcCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGAGGGGAGATCtcccataagcgctaacttaagggatgtggtattccgcctgatatgatttaacgtgccgatgaattactcacacgataacgagtcagccattctcgc                                           >  2:149519‑M1/1‑47 (MQ=255)
                                                                                                   gcgcCTCTGCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggc                                           <  1:483993‑M1/143‑97 (MQ=255)
                                                                                                    cattcttcagatggttcaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTCACCGCCTGTCGCGCAGAACCACCcccgcgtgcaggg                                          <  1:463858‑M1/101‑7 (MQ=255)
                                                                                                    cattcttcagatggtccaacccttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATgg                                          >  1:8725‑M1/43‑143 (MQ=255)
                                                                                                           tCCCAGGTTTCCGGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattg                                   <  1:269989‑M1/143‑105 (MQ=255)
                                                                                                                    tCCGGACTGAAGCCCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccg                          <  2:289503‑M1/143‑114 (MQ=255)
                                                                                                                         cttaagttagcgcttatgggaGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGATTTTAACCGCCTGTCGCGCAGAACCACACACGCGGGCATGGGGATCTGCAAGCGGTATACCt                     <  1:263616‑M1/122‑1 (MQ=255)
                                                                                                                             aaGCCCGGCAGTGGGGAGATCccccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactgg                 <  1:75876‑M1/143‑123 (MQ=255)
                                                                                                                             aaGACCGGCAGTGGGGAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactgg                 <  2:276785‑M1/143‑123 (MQ=255)
                                                                                                                                     cAGTGGGGAGATGtcccataagcgctaacttaagggtggtggcattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttcg         <  1:416197‑M1/143‑131 (MQ=255)
                                                                                                                                          gggAGATCtcccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaaggactggagacataggcacg    >  1:459972‑M1/1‑8 (MQ=255)
                                                                                                                                           ggaGAGCGCACCCCACGCTTCGCGCTCGCCTTCACGCAGGCAAACAGACAGCCCGTCGCGGGTTTTTACCCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGTTACGCATTACgg   >  1:347669‑M1/4‑143 (MQ=255)
                                                                                                                                            caGATCTCCCCCCCCCCGCCGCTCGCGCCTTCACGCAGCCAAACACGCGGCCCGTCGCGGGTTTTTAACCGCCCGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGa  >  2:220377‑M1/3‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                            
CTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGA  >  NC_000913/2375686‑2375968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.